Variant report

Variant rs397742
Chromosome Location chr19:20986530-20986531
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
2 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
3 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
4 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:20974800-20992000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr19:20975200-20989400 ZNF genes & repeats Primary hematopoietic stem cells blood
8 chr19:20975200-20992000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
9 chr19:20975600-20989200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
10 chr19:20976600-20990800 ZNF genes & repeats Dnd41 blood
11 chr19:20976800-20990800 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
12 chr19:20977000-20991200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
13 chr19:20977600-20991000 ZNF genes & repeats Primary T cells from cord blood blood
14 chr19:20977800-20990200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
15 chr19:20978400-20991200 ZNF genes & repeats H1 Cell Line embryonic stem cell
16 chr19:20978800-20987600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr19:20979000-20987200 Weak transcription Brain Cingulate Gyrus brain
18 chr19:20979800-20987600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr19:20981200-20991400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr19:20982000-20987000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr19:20982800-20990800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
22 chr19:20982800-20991200 ZNF genes & repeats Duodenum Mucosa Duodenum
23 chr19:20983000-20987600 Weak transcription Brain Anterior Caudate brain
24 chr19:20983400-20987000 Weak transcription Right Ventricle heart
25 chr19:20983400-20987200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr19:20983400-20988000 Weak transcription Brain Hippocampus Middle brain
27 chr19:20983600-20987200 Weak transcription Osteobl bone
28 chr19:20983600-20988000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr19:20984400-20986600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr19:20984400-20988800 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
31 chr19:20984400-20990800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
32 chr19:20984600-20987000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr19:20984600-20987000 Weak transcription H9 Cell Line embryonic stem cell
34 chr19:20984600-20987000 Weak transcription Esophagus oesophagus
35 chr19:20984600-20987000 Weak transcription Fetal Stomach stomach
36 chr19:20984600-20987000 Weak transcription Lung lung
37 chr19:20984600-20987000 Weak transcription Ovary ovary
38 chr19:20984600-20987000 Weak transcription Thymus Thymus
39 chr19:20984800-20987000 Weak transcription Brain Germinal Matrix brain
40 chr19:20984800-20987200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr19:20984800-20987200 Weak transcription Pancreas Pancrea
42 chr19:20984800-20987200 Weak transcription Psoas Muscle Psoas
43 chr19:20984800-20987200 Weak transcription Small Intestine intestine
44 chr19:20985000-20987000 Weak transcription Adipose Nuclei Adipose
45 chr19:20985200-20987200 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr19:20985400-20986800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
47 chr19:20985400-20987200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr19:20985800-20988400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
49 chr19:20986400-20986600 ZNF genes & repeats HSMM muscle
50 chr19:20986400-20989000 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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