The 2.0 version of rSNPBase

Variant report

Variant rs58638426
Chromosome Location chr19:20977986-20977987
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20978200 Weak transcription Spleen Spleen
2 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
4 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
5 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
7 chr19:20960000-20978400 Weak transcription HSMM muscle
8 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
10 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
11 chr19:20960200-20979600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr19:20960200-20979600 Weak transcription NH-A brain
13 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
14 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr19:20962400-20978400 Weak transcription Osteobl bone
17 chr19:20966400-20985400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr19:20966800-20978600 Weak transcription Placenta Placenta
19 chr19:20967600-20978200 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr19:20967800-20978400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr19:20968000-20978400 Weak transcription HepG2 liver
22 chr19:20968200-20978600 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr19:20968400-20978400 Weak transcription Adipose Nuclei Adipose
24 chr19:20968400-20979600 Weak transcription Rectal Smooth Muscle rectum
25 chr19:20968400-20980600 Weak transcription Colonic Mucosa Colon
26 chr19:20968800-20978200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr19:20968800-20978400 Weak transcription Left Ventricle heart
28 chr19:20969600-20981000 Weak transcription Psoas Muscle Psoas
29 chr19:20971000-20980600 Weak transcription Muscle Satellite Cultured Cells --
30 chr19:20973000-20978200 Weak transcription Fetal Muscle Trunk muscle
31 chr19:20973000-20978200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr19:20974000-20978000 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr19:20974600-20978400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr19:20974800-20992000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr19:20975000-20978800 Weak transcription Right Ventricle heart
36 chr19:20975200-20978400 Strong transcription H1 Cell Line embryonic stem cell
37 chr19:20975200-20978400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr19:20975200-20979600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr19:20975200-20982200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr19:20975200-20983600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
41 chr19:20975200-20983600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
42 chr19:20975200-20984800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
43 chr19:20975200-20989400 ZNF genes & repeats Primary hematopoietic stem cells blood
44 chr19:20975200-20992000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
45 chr19:20975400-20978400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr19:20975400-20979000 ZNF genes & repeats Primary monocytes fromperipheralblood blood
47 chr19:20975400-20982000 Weak transcription Brain Anterior Caudate brain
48 chr19:20975600-20980200 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr19:20975600-20981600 ZNF genes & repeats Brain Germinal Matrix brain
50 chr19:20975600-20984400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015