The 2.0 version of rSNPBase

Variant report

Variant rs13343627
Chromosome Location chr19:20967107-20967108
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20978200 Weak transcription Spleen Spleen
2 chr19:20959800-20967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr19:20959800-20967600 Weak transcription Left Ventricle heart
4 chr19:20959800-20967800 Weak transcription Aorta Aorta
5 chr19:20959800-20970400 Weak transcription Gastric stomach
6 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr19:20960000-20967200 Weak transcription Rectal Smooth Muscle rectum
8 chr19:20960000-20967600 Weak transcription Adipose Nuclei Adipose
9 chr19:20960000-20968000 Weak transcription Colonic Mucosa Colon
10 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
12 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain
15 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
16 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
17 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
19 chr19:20960000-20978400 Weak transcription HSMM muscle
20 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
22 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
23 chr19:20960200-20967600 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr19:20960200-20967800 Weak transcription HepG2 liver
25 chr19:20960200-20968200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr19:20960200-20979600 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr19:20960200-20979600 Weak transcription NH-A brain
28 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
29 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr19:20960800-20976600 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr19:20961000-20973600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
32 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr19:20962400-20978400 Weak transcription Osteobl bone
34 chr19:20963000-20969600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
35 chr19:20964000-20967600 Weak transcription HMEC breast
36 chr19:20964000-20969000 Weak transcription Fetal Brain Male brain
37 chr19:20964000-20970200 Weak transcription Ovary ovary
38 chr19:20964000-20975600 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr19:20964400-20967800 Weak transcription Small Intestine intestine
40 chr19:20964600-20967800 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr19:20965000-20967200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr19:20965000-20967600 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr19:20965000-20967600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr19:20965000-20967800 Weak transcription Fetal Thymus thymus
45 chr19:20965000-20967800 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr19:20965000-20975400 ZNF genes & repeats Dnd41 blood
47 chr19:20965200-20967800 Weak transcription Fetal Stomach stomach
48 chr19:20966000-20970600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
49 chr19:20966400-20967600 Strong transcription Primary T helper cells fromperipheralblood blood
50 chr19:20966400-20967800 Strong transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015