The 2.0 version of rSNPBase

Variant report

Variant rs10415086
Chromosome Location chr19:20962872-20962873
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20963400 Weak transcription Small Intestine intestine
2 chr19:20959600-20978200 Weak transcription Spleen Spleen
3 chr19:20959800-20963600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr19:20959800-20963600 Weak transcription Lung lung
5 chr19:20959800-20963600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr19:20959800-20967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr19:20959800-20967600 Weak transcription Left Ventricle heart
8 chr19:20959800-20967800 Weak transcription Aorta Aorta
9 chr19:20959800-20970400 Weak transcription Gastric stomach
10 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr19:20960000-20963000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr19:20960000-20963200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr19:20960000-20963200 Weak transcription Brain Anterior Caudate brain
14 chr19:20960000-20963400 Weak transcription Fetal Muscle Leg muscle
15 chr19:20960000-20963600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr19:20960000-20964600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr19:20960000-20966600 Weak transcription Fetal Lung lung
18 chr19:20960000-20966800 Weak transcription Fetal Muscle Trunk muscle
19 chr19:20960000-20966800 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr19:20960000-20967200 Weak transcription Rectal Smooth Muscle rectum
21 chr19:20960000-20967600 Weak transcription Adipose Nuclei Adipose
22 chr19:20960000-20968000 Weak transcription Colonic Mucosa Colon
23 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
25 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
26 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain
28 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
29 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
30 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
32 chr19:20960000-20978400 Weak transcription HSMM muscle
33 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
35 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
36 chr19:20960200-20963000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr19:20960200-20963400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr19:20960200-20963400 Weak transcription NHEK skin
39 chr19:20960200-20963600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr19:20960200-20963600 Weak transcription Fetal Brain Male brain
41 chr19:20960200-20963600 Weak transcription HMEC breast
42 chr19:20960200-20963800 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr19:20960200-20964000 Enhancers Ovary ovary
44 chr19:20960200-20965200 Weak transcription Primary T helper cells PMA-I stimulated --
45 chr19:20960200-20966400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr19:20960200-20966400 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr19:20960200-20966600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr19:20960200-20966600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr19:20960200-20966600 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr19:20960200-20966600 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015