The 2.0 version of rSNPBase

Variant report

Variant rs6485706
Chromosome Location chr11:46927877-46927878
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:46896600-46928200 Weak transcription Fetal Heart heart
2 chr11:46911200-46933800 Weak transcription Fetal Kidney kidney
3 chr11:46917800-46934000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr11:46917800-46934000 Weak transcription NHLF lung
5 chr11:46918800-46928000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr11:46918800-46934000 Weak transcription Colonic Mucosa Colon
7 chr11:46920400-46928400 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr11:46921200-46928400 Weak transcription Fetal Brain Female brain
9 chr11:46921600-46928000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr11:46921600-46928000 Weak transcription Ovary ovary
11 chr11:46921600-46933800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr11:46921600-46933800 Weak transcription NHEK skin
13 chr11:46921600-46934000 Weak transcription Rectal Smooth Muscle rectum
14 chr11:46921600-46934200 Weak transcription Esophagus oesophagus
15 chr11:46921600-46936000 Weak transcription Pancreas Pancrea
16 chr11:46921600-46936000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr11:46921800-46928000 Weak transcription HepG2 liver
18 chr11:46921800-46934000 Weak transcription Fetal Intestine Large intestine
19 chr11:46921800-46938400 Weak transcription Gastric stomach
20 chr11:46922000-46928000 Weak transcription Placenta Placenta
21 chr11:46922000-46928200 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr11:46922000-46928400 Weak transcription H9 Cell Line embryonic stem cell
23 chr11:46922000-46928400 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr11:46922200-46934000 Weak transcription Duodenum Mucosa Duodenum
25 chr11:46922200-46934000 Weak transcription Fetal Intestine Small intestine
26 chr11:46923000-46933800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr11:46923200-46928200 Weak transcription Stomach Smooth Muscle stomach
28 chr11:46923400-46928000 Weak transcription Fetal Lung lung
29 chr11:46924000-46929400 Enhancers Brain Anterior Caudate brain
30 chr11:46924200-46928000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr11:46924200-46929200 Enhancers Brain Angular Gyrus brain
32 chr11:46924200-46929400 Enhancers Brain Substantia Nigra brain
33 chr11:46924600-46930000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr11:46924800-46928000 Enhancers Brain Hippocampus Middle brain
35 chr11:46924800-46928800 Enhancers Fetal Muscle Leg muscle
36 chr11:46925200-46929000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
37 chr11:46925400-46928000 Enhancers HUES6 Cell Line embryonic stem cell
38 chr11:46925600-46929400 Enhancers iPS-15b Cell Line embryonic stem cell
39 chr11:46925800-46928000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr11:46926000-46928000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr11:46926000-46928000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr11:46926000-46928400 Weak transcription Brain Germinal Matrix brain
43 chr11:46926000-46928800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
44 chr11:46926000-46932000 Weak transcription Psoas Muscle Psoas
45 chr11:46926000-46934000 Weak transcription Fetal Brain Male brain
46 chr11:46926200-46928000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr11:46926200-46928000 Weak transcription Primary hematopoietic stem cells short term culture blood
48 chr11:46926200-46928600 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr11:46926200-46929200 Enhancers Brain Cingulate Gyrus brain
50 chr11:46926200-46932800 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015