Variant report

Variant	rs7128102
Chromosome Location	chr11:46928455-46928456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10466476	0.86[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.88[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.88[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	0.87[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	0.81[YRI][hapmap]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463814	1.00[ASN][1000 genomes]
rs4500447	0.82[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	0.88[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.88[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7108147	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	1.00[CEU][hapmap]
rs7115986	0.88[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
2	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:46917800-46934000	Weak transcription	NHLF	lung
4	chr11:46918800-46934000	Weak transcription	Colonic Mucosa	Colon
5	chr11:46921600-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:46921600-46933800	Weak transcription	NHEK	skin
7	chr11:46921600-46934000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:46921600-46934200	Weak transcription	Esophagus	oesophagus
9	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
10	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:46921800-46934000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:46921800-46938400	Weak transcription	Gastric	stomach
13	chr11:46922200-46934000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:46922200-46934000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:46923000-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:46924000-46929400	Enhancers	Brain Anterior Caudate	brain
17	chr11:46924200-46929200	Enhancers	Brain Angular Gyrus	brain
18	chr11:46924200-46929400	Enhancers	Brain Substantia Nigra	brain
19	chr11:46924600-46930000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:46924800-46928800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:46925200-46929000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:46925600-46929400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:46926000-46928800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:46926000-46932000	Weak transcription	Psoas Muscle	Psoas
25	chr11:46926000-46934000	Weak transcription	Fetal Brain Male	brain
26	chr11:46926200-46928600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:46926200-46929200	Enhancers	Brain Cingulate Gyrus	brain
28	chr11:46926200-46932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:46926400-46934000	Weak transcription	Right Atrium	heart
30	chr11:46926400-46934000	Weak transcription	Right Ventricle	heart
31	chr11:46926800-46928800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:46927400-46928600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:46927400-46928800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:46927400-46929200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:46927600-46929200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:46927600-46932200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr11:46927800-46928600	Enhancers	Stomach Mucosa	stomach
38	chr11:46927800-46933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:46927800-46933600	Weak transcription	Spleen	Spleen
40	chr11:46928000-46928600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr11:46928000-46928600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:46928000-46928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:46928000-46928600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:46928000-46928600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:46928000-46928600	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr11:46928000-46928600	Enhancers	HepG2	liver
47	chr11:46928000-46928600	Enhancers	HSMMtube	muscle
48	chr11:46928000-46928800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:46928000-46928800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:46928000-46928800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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