Variant report

Variant	rs9662878
Chromosome Location	chr1:45462256-45462257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45282616..45286100-chr1:45459939..45463274,4	K562	blood:
2	chr1:45450881..45453767-chr1:45459648..45462448,2	K562	blood:

Variant related genes	Relation type
ENSG00000070785	Chromatin interaction
ENSG00000202444	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10157761	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10159318	0.87[EUR][1000 genomes]
rs10218751	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1022814	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1114390	0.87[EUR][1000 genomes]
rs11211042	0.84[EUR][1000 genomes]
rs11211043	0.85[EUR][1000 genomes]
rs11211052	0.90[EUR][1000 genomes]
rs11211061	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211062	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211063	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs114833	0.88[EUR][1000 genomes]
rs12080887	0.90[EUR][1000 genomes]
rs12093313	0.88[EUR][1000 genomes]
rs12095412	0.81[EUR][1000 genomes]
rs12402452	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12403201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12404127	0.88[EUR][1000 genomes]
rs12404168	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12405110	0.82[EUR][1000 genomes]
rs12405721	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12407565	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12408763	0.84[EUR][1000 genomes]
rs12410088	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12411070	0.89[EUR][1000 genomes]
rs13374816	0.91[EUR][1000 genomes]
rs1392035	0.87[EUR][1000 genomes]
rs1572379	0.88[EUR][1000 genomes]
rs1627320	0.89[EUR][1000 genomes]
rs16832251	0.83[EUR][1000 genomes]
rs16832301	0.86[EUR][1000 genomes]
rs17390300	0.86[EUR][1000 genomes]
rs17390328	0.86[EUR][1000 genomes]
rs17390356	0.89[EUR][1000 genomes]
rs17390398	0.89[EUR][1000 genomes]
rs17390824	0.91[EUR][1000 genomes]
rs17390859	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17390900	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17390983	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17392632	0.87[EUR][1000 genomes]
rs174636	0.86[EUR][1000 genomes]
rs2078329	0.83[EUR][1000 genomes]
rs2102035	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2133501	0.87[EUR][1000 genomes]
rs2261859	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2295996	0.83[EUR][1000 genomes]
rs263960	0.87[EUR][1000 genomes]
rs263961	0.88[EUR][1000 genomes]
rs263967	0.89[EUR][1000 genomes]
rs263971	0.88[EUR][1000 genomes]
rs263979	0.88[EUR][1000 genomes]
rs263981	0.89[EUR][1000 genomes]
rs264002	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs264004	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs264006	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs264007	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs264010	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs264015	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28700974	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28707013	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28819230	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35700678	0.88[EUR][1000 genomes]
rs371098	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3738248	0.89[EUR][1000 genomes]
rs3767490	0.90[EUR][1000 genomes]
rs3889352	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3889822	0.89[EUR][1000 genomes]
rs392410	0.88[EUR][1000 genomes]
rs4082644	0.89[EUR][1000 genomes]
rs41269085	0.83[EUR][1000 genomes]
rs423959	0.91[EUR][1000 genomes]
rs427392	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs435311	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4415616	0.89[EUR][1000 genomes]
rs441876	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4424549	0.91[EUR][1000 genomes]
rs4472791	0.89[EUR][1000 genomes]
rs4515833	0.89[EUR][1000 genomes]
rs471564	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs539409	0.94[EUR][1000 genomes]
rs546354	0.94[EUR][1000 genomes]
rs55708712	0.89[EUR][1000 genomes]
rs55756712	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55792507	0.89[EUR][1000 genomes]
rs55807836	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55851444	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55893665	0.89[EUR][1000 genomes]
rs55916129	0.89[EUR][1000 genomes]
rs55926235	0.87[EUR][1000 genomes]
rs56102504	0.89[EUR][1000 genomes]
rs57104118	0.89[EUR][1000 genomes]
rs57769237	0.89[EUR][1000 genomes]
rs58191426	0.88[EUR][1000 genomes]
rs59050077	0.90[EUR][1000 genomes]
rs59552012	0.87[EUR][1000 genomes]
rs59559455	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59938994	0.87[EUR][1000 genomes]
rs60082006	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs606873	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60741033	0.85[EUR][1000 genomes]
rs60787198	0.87[EUR][1000 genomes]
rs608649	0.90[EUR][1000 genomes]
rs61149327	0.87[EUR][1000 genomes]
rs61673889	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs637224	0.94[EUR][1000 genomes]
rs640743	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6684417	0.89[EUR][1000 genomes]
rs67058449	0.89[EUR][1000 genomes]
rs72674051	0.82[EUR][1000 genomes]
rs72674064	0.87[EUR][1000 genomes]
rs72674081	0.87[EUR][1000 genomes]
rs72674084	0.85[EUR][1000 genomes]
rs72676504	0.90[EUR][1000 genomes]
rs72676505	0.86[EUR][1000 genomes]
rs72676509	0.90[EUR][1000 genomes]
rs72676513	0.88[EUR][1000 genomes]
rs72676525	0.89[EUR][1000 genomes]
rs72676529	0.89[EUR][1000 genomes]
rs72676536	0.88[EUR][1000 genomes]
rs72676539	0.89[EUR][1000 genomes]
rs72676542	0.89[EUR][1000 genomes]
rs72676550	0.89[EUR][1000 genomes]
rs72676553	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72676555	0.89[EUR][1000 genomes]
rs72676557	0.89[EUR][1000 genomes]
rs72676559	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72676561	0.89[EUR][1000 genomes]
rs72676563	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72676581	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72676600	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72677810	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7515226	0.91[EUR][1000 genomes]
rs7519592	0.89[EUR][1000 genomes]
rs7529213	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7529221	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7531391	0.89[EUR][1000 genomes]
rs7533716	0.87[EUR][1000 genomes]
rs7546853	0.89[EUR][1000 genomes]
rs9662872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45452800-45466600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:45452800-45467800	Weak transcription	Osteobl	bone
3	chr1:45452800-45475200	Weak transcription	Right Atrium	heart
4	chr1:45454600-45467800	Weak transcription	K562	blood
5	chr1:45459800-45466400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:45459800-45468400	Weak transcription	Fetal Lung	lung
7	chr1:45460200-45467600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:45460400-45466000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:45460600-45467000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:45460800-45465400	Weak transcription	Adipose Nuclei	Adipose
11	chr1:45460800-45468400	Weak transcription	HepG2	liver

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