The 2.0 version of rSNPBase

Variant report

Variant rs12405721
Chromosome Location chr1:45414433-45414434
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45356000-45423800 Weak transcription Thymus Thymus
2 chr1:45359200-45423600 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:45362200-45424200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:45389200-45450200 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:45390400-45426200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:45391200-45438400 Weak transcription Dnd41 blood
7 chr1:45391200-45439800 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr1:45391400-45437200 Weak transcription Fetal Thymus thymus
9 chr1:45392400-45433800 Weak transcription Primary hematopoietic stem cells blood
10 chr1:45392600-45423600 Weak transcription Fetal Intestine Large intestine
11 chr1:45392800-45443200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:45397600-45424000 Weak transcription Primary B cells from peripheral blood blood
13 chr1:45397800-45435800 Weak transcription Primary B cells from cord blood blood
14 chr1:45400800-45421400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:45402800-45424200 Weak transcription Lung lung
16 chr1:45407200-45415800 Weak transcription Primary monocytes fromperipheralblood blood
17 chr1:45407400-45423600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:45407400-45423800 Weak transcription Primary T cells from cord blood blood
19 chr1:45407600-45438400 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:45410200-45424200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:45410400-45423600 Weak transcription NHEK skin
22 chr1:45410600-45415400 Enhancers Fetal Stomach stomach
23 chr1:45410600-45423800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:45411400-45416000 Enhancers Stomach Mucosa stomach
25 chr1:45411400-45423800 Weak transcription Fetal Muscle Trunk muscle
26 chr1:45411600-45415200 Enhancers HepG2 liver
27 chr1:45411600-45415400 Enhancers Skeletal Muscle Male skeletal muscle
28 chr1:45411800-45415400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:45412000-45440000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr1:45412400-45415600 Enhancers Duodenum Mucosa Duodenum
31 chr1:45412800-45441000 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr1:45413000-45422600 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:45413000-45429200 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr1:45413200-45414600 Weak transcription Fetal Intestine Small intestine
35 chr1:45413200-45424200 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:45413200-45436200 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr1:45413400-45415000 Enhancers Skeletal Muscle Female skeletal muscle
38 chr1:45413400-45416200 Enhancers Fetal Brain Male brain
39 chr1:45413400-45437800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:45413400-45439600 Weak transcription Primary T helper cells fromperipheralblood blood
41 chr1:45413400-45439800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:45413400-45441400 Weak transcription Brain Anterior Caudate brain
43 chr1:45413600-45441400 Weak transcription Colon Smooth Muscle Colon
44 chr1:45413600-45442800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr1:45413800-45423600 Weak transcription Liver Liver
46 chr1:45413800-45423800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:45413800-45424000 Weak transcription GM12878-XiMat blood
48 chr1:45413800-45433800 Weak transcription NH-A brain
49 chr1:45413800-45437600 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:45413800-45438400 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015