The 2.0 version of rSNPBase

Variant report

Variant rs1877620
Chromosome Location chr1:227401647-227401648
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227333400-227405600 Weak transcription Adipose Nuclei Adipose
2 chr1:227346800-227403800 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:227346800-227405800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:227346800-227406800 Weak transcription Fetal Kidney kidney
5 chr1:227348200-227408400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:227348200-227412200 Weak transcription Fetal Muscle Leg muscle
7 chr1:227370000-227413600 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr1:227375600-227410800 Weak transcription HepG2 liver
9 chr1:227376600-227412600 Weak transcription Fetal Lung lung
10 chr1:227380200-227402200 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:227380200-227405200 Weak transcription Gastric stomach
12 chr1:227380200-227421800 Weak transcription Ovary ovary
13 chr1:227380400-227404000 Weak transcription Muscle Satellite Cultured Cells --
14 chr1:227380400-227406800 Weak transcription NHDF-Ad bronchial
15 chr1:227381600-227406600 Weak transcription Duodenum Mucosa Duodenum
16 chr1:227382000-227414000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:227383600-227421800 Weak transcription Stomach Smooth Muscle stomach
18 chr1:227386200-227433400 Weak transcription Fetal Stomach stomach
19 chr1:227386400-227413800 Weak transcription Brain Anterior Caudate brain
20 chr1:227386800-227406600 Weak transcription Fetal Intestine Small intestine
21 chr1:227387000-227413600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:227387400-227414000 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr1:227390600-227413600 Weak transcription Small Intestine intestine
24 chr1:227396800-227413600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:227397000-227406800 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr1:227398200-227413600 Weak transcription NHLF lung
27 chr1:227398600-227407000 Weak transcription Lung lung
28 chr1:227398800-227405600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:227398800-227407000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr1:227398800-227411200 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr1:227398800-227413800 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr1:227399000-227402200 Weak transcription Psoas Muscle Psoas
33 chr1:227399000-227406400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:227399000-227406400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:227399000-227408800 Weak transcription Liver Liver
36 chr1:227399200-227406800 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:227399200-227407000 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:227399400-227402800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:227399400-227411200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:227399400-227415400 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:227399600-227413200 Weak transcription HSMM muscle
42 chr1:227399800-227407000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:227399800-227411000 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr1:227400400-227402200 Weak transcription Fetal Heart heart
45 chr1:227400400-227402400 Weak transcription Stomach Mucosa stomach
46 chr1:227400400-227403600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:227400400-227406600 Weak transcription Fetal Intestine Large intestine
48 chr1:227400400-227406600 Weak transcription Right Ventricle heart
49 chr1:227400400-227407600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:227400400-227408200 Weak transcription K562 blood

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Last update: Aug 31, 2015