The 2.0 version of rSNPBase

Variant report

Variant rs545171
Chromosome Location chr1:227286814-227286815
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:227214800-227329200 Weak transcription Right Ventricle heart
4 chr1:227216800-227287600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:227220600-227288000 Weak transcription Colon Smooth Muscle Colon
6 chr1:227247400-227299800 Weak transcription HMEC breast
7 chr1:227251000-227300000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:227257600-227288000 Weak transcription HSMMtube muscle
9 chr1:227257800-227312200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
11 chr1:227260400-227287800 Weak transcription NHEK skin
12 chr1:227261400-227287800 Weak transcription Osteobl bone
13 chr1:227268800-227287000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr1:227271800-227287800 Weak transcription Rectal Smooth Muscle rectum
15 chr1:227271800-227288000 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:227271800-227299600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:227272600-227294400 Weak transcription Fetal Heart heart
18 chr1:227272800-227295000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:227272800-227295000 Weak transcription Primary hematopoietic stem cells blood
20 chr1:227272800-227331000 Weak transcription Lung lung
21 chr1:227273000-227312400 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr1:227275400-227287000 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr1:227275800-227302600 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr1:227277000-227288600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:227277200-227302600 Weak transcription Brain Substantia Nigra brain
26 chr1:227279200-227287000 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:227279200-227287800 Weak transcription Aorta Aorta
28 chr1:227279200-227287800 Weak transcription Brain Anterior Caudate brain
29 chr1:227279200-227287800 Weak transcription Fetal Stomach stomach
30 chr1:227279400-227288000 Weak transcription NH-A brain
31 chr1:227279800-227287200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:227279800-227299000 Weak transcription Placenta Placenta
33 chr1:227280800-227298800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:227281800-227294400 Weak transcription Fetal Kidney kidney
35 chr1:227282400-227287800 Weak transcription NHLF lung
36 chr1:227282400-227288000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:227282600-227287600 Weak transcription Liver Liver
38 chr1:227282600-227318000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:227283000-227287800 Weak transcription HepG2 liver
40 chr1:227283800-227288600 Strong transcription Cortex derived primary cultured neurospheres brain
41 chr1:227284000-227288800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:227284400-227288600 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:227284800-227287200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:227284800-227288600 Strong transcription Brain Hippocampus Middle brain
45 chr1:227285000-227288600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:227285200-227287200 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:227285200-227287400 Strong transcription Psoas Muscle Psoas
48 chr1:227285200-227288200 Strong transcription Sigmoid Colon Sigmoid Colon
49 chr1:227285200-227288600 Strong transcription Fetal Brain Female brain
50 chr1:227285200-227288600 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015