The 2.0 version of rSNPBase

Variant report

Variant rs11799547
Chromosome Location chr1:227272139-227272140
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227190600-227272600 Weak transcription Lung lung
3 chr1:227203000-227278800 Weak transcription Pancreas Pancrea
4 chr1:227209000-227272400 Weak transcription Fetal Intestine Small intestine
5 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:227214800-227329200 Weak transcription Right Ventricle heart
7 chr1:227216800-227287600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:227217000-227278800 Weak transcription Placenta Placenta
9 chr1:227220600-227272600 Weak transcription Aorta Aorta
10 chr1:227220600-227288000 Weak transcription Colon Smooth Muscle Colon
11 chr1:227226800-227272400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:227226800-227278400 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:227226800-227285600 Weak transcription Brain Germinal Matrix brain
14 chr1:227227000-227272200 Weak transcription Fetal Heart heart
15 chr1:227227000-227282200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:227227400-227272400 Weak transcription Ovary ovary
17 chr1:227227400-227281200 Weak transcription Fetal Kidney kidney
18 chr1:227227400-227284200 Weak transcription Brain Angular Gyrus brain
19 chr1:227228000-227277000 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:227232800-227279200 Weak transcription Stomach Mucosa stomach
21 chr1:227236000-227286200 Weak transcription Fetal Brain Male brain
22 chr1:227238600-227278400 Weak transcription Brain Hippocampus Middle brain
23 chr1:227240000-227286800 Weak transcription Brain Cingulate Gyrus brain
24 chr1:227246400-227278400 Weak transcription NH-A brain
25 chr1:227247400-227272400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr1:227247400-227299800 Weak transcription HMEC breast
27 chr1:227251000-227300000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:227253600-227278600 Weak transcription Adipose Nuclei Adipose
29 chr1:227257000-227278400 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:227257600-227288000 Weak transcription HSMMtube muscle
31 chr1:227257800-227312200 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr1:227259000-227280600 Weak transcription HepG2 liver
33 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
34 chr1:227260000-227278600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr1:227260200-227278600 Weak transcription Stomach Smooth Muscle stomach
36 chr1:227260200-227281800 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:227260400-227287800 Weak transcription NHEK skin
38 chr1:227261000-227274400 Weak transcription iPS-18 Cell Line embryonic stem cell
39 chr1:227261400-227287800 Weak transcription Osteobl bone
40 chr1:227267400-227272600 Weak transcription Gastric stomach
41 chr1:227268600-227278600 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:227268800-227287000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
43 chr1:227269000-227272400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:227270200-227278400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:227270400-227272800 ZNF genes & repeats A549 lung
46 chr1:227270400-227275000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:227270600-227273000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:227270800-227273000 Strong transcription HUVEC blood vessel
49 chr1:227270800-227275800 Strong transcription HSMM muscle
50 chr1:227270800-227276000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015