The 2.0 version of rSNPBase

Variant report

Variant rs558921
Chromosome Location chr1:227316032-227316033
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227214800-227329200 Weak transcription Right Ventricle heart
2 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
3 chr1:227272800-227331000 Weak transcription Lung lung
4 chr1:227282600-227318000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:227286400-227328200 Weak transcription Brain Germinal Matrix brain
6 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
7 chr1:227288000-227326400 Weak transcription A549 lung
8 chr1:227288200-227332400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:227288400-227343000 Weak transcription Rectal Smooth Muscle rectum
10 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:227288600-227328200 Weak transcription Fetal Stomach stomach
12 chr1:227288600-227332400 Weak transcription NHLF lung
13 chr1:227288600-227333600 Weak transcription Esophagus oesophagus
14 chr1:227288800-227317200 Weak transcription NHEK skin
15 chr1:227288800-227330000 Weak transcription NHDF-Ad bronchial
16 chr1:227295200-227346400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:227296400-227326200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:227296600-227316400 Weak transcription HSMMtube muscle
19 chr1:227296600-227326200 Weak transcription Fetal Lung lung
20 chr1:227298600-227351800 Weak transcription Hela-S3 cervix
21 chr1:227299200-227318800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:227299800-227319600 Weak transcription Fetal Intestine Large intestine
23 chr1:227299800-227332600 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr1:227300000-227316200 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr1:227300000-227316400 Weak transcription Osteobl bone
26 chr1:227300000-227321800 Weak transcription Colon Smooth Muscle Colon
27 chr1:227300000-227325800 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:227300000-227326400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:227300000-227328600 Weak transcription Fetal Brain Female brain
30 chr1:227300000-227329200 Weak transcription Aorta Aorta
31 chr1:227300000-227333800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:227300200-227316200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:227300200-227316200 Weak transcription HepG2 liver
35 chr1:227300200-227322000 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:227300200-227322600 Weak transcription Ovary ovary
37 chr1:227300200-227326200 Weak transcription Liver Liver
38 chr1:227300200-227326400 Weak transcription Stomach Smooth Muscle stomach
39 chr1:227300200-227334400 Weak transcription Stomach Mucosa stomach
40 chr1:227300600-227316400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:227300600-227316400 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:227300600-227326600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:227303800-227316200 Weak transcription K562 blood
44 chr1:227305400-227316400 Weak transcription Fetal Muscle Leg muscle
45 chr1:227307000-227326400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:227308000-227316200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:227311000-227329200 Weak transcription Pancreas Pancrea
48 chr1:227311000-227329400 Weak transcription Fetal Intestine Small intestine
49 chr1:227312800-227316400 Weak transcription HSMM muscle
50 chr1:227313000-227322000 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015