The 2.0 version of rSNPBase

Variant report

Variant rs6675179
Chromosome Location chr1:227332043-227332044
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
2 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
3 chr1:227288200-227332400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:227288400-227343000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:227288600-227332400 Weak transcription NHLF lung
7 chr1:227288600-227333600 Weak transcription Esophagus oesophagus
8 chr1:227295200-227346400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:227298600-227351800 Weak transcription Hela-S3 cervix
10 chr1:227299800-227332600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:227300000-227333800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:227300200-227334400 Weak transcription Stomach Mucosa stomach
14 chr1:227316600-227352200 Weak transcription Gastric stomach
15 chr1:227317000-227374200 Weak transcription HepG2 liver
16 chr1:227319600-227332400 Weak transcription Brain Angular Gyrus brain
17 chr1:227323200-227342600 Weak transcription Colon Smooth Muscle Colon
18 chr1:227323200-227346400 Weak transcription Brain Substantia Nigra brain
19 chr1:227324200-227348400 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:227325200-227333800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:227325400-227333400 Strong transcription Adipose Nuclei Adipose
22 chr1:227325400-227334400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:227325400-227334800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:227325400-227335200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:227325600-227333600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:227325600-227333600 Strong transcription Rectal Mucosa Donor 31 rectum
27 chr1:227326200-227333600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:227326200-227333800 Strong transcription Liver Liver
29 chr1:227326400-227333400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:227326600-227333400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:227326600-227334600 Strong transcription HUVEC blood vessel
32 chr1:227326600-227355200 Weak transcription Small Intestine intestine
33 chr1:227327000-227334600 Weak transcription H9 Cell Line embryonic stem cell
34 chr1:227327000-227346200 Weak transcription NH-A brain
35 chr1:227327000-227346400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:227327000-227347600 Weak transcription Fetal Heart heart
37 chr1:227327200-227341200 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr1:227327200-227348200 Weak transcription Primary hematopoietic stem cells blood
39 chr1:227327200-227348200 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:227328000-227333400 Strong transcription Brain Hippocampus Middle brain
41 chr1:227328000-227335000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:227328000-227354400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:227328200-227332200 Strong transcription Fetal Stomach stomach
44 chr1:227328200-227333400 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr1:227328200-227333400 Strong transcription HSMM muscle
46 chr1:227328400-227333400 Strong transcription Brain Inferior Temporal Lobe brain
47 chr1:227328400-227333400 Strong transcription Fetal Muscle Leg muscle
48 chr1:227328400-227335400 Weak transcription ES-WA7 Cell Line embryonic stem cell
49 chr1:227328400-227350000 Weak transcription Fetal Brain Male brain
50 chr1:227328600-227333200 Strong transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015