The 2.0 version of rSNPBase

Variant report

Variant rs6426564
Chromosome Location chr1:227278545-227278546
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227203000-227278800 Weak transcription Pancreas Pancrea
3 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:227214800-227329200 Weak transcription Right Ventricle heart
5 chr1:227216800-227287600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:227217000-227278800 Weak transcription Placenta Placenta
7 chr1:227220600-227288000 Weak transcription Colon Smooth Muscle Colon
8 chr1:227226800-227285600 Weak transcription Brain Germinal Matrix brain
9 chr1:227227000-227282200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:227227400-227281200 Weak transcription Fetal Kidney kidney
11 chr1:227227400-227284200 Weak transcription Brain Angular Gyrus brain
12 chr1:227232800-227279200 Weak transcription Stomach Mucosa stomach
13 chr1:227236000-227286200 Weak transcription Fetal Brain Male brain
14 chr1:227240000-227286800 Weak transcription Brain Cingulate Gyrus brain
15 chr1:227247400-227299800 Weak transcription HMEC breast
16 chr1:227251000-227300000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:227253600-227278600 Weak transcription Adipose Nuclei Adipose
18 chr1:227257600-227288000 Weak transcription HSMMtube muscle
19 chr1:227257800-227312200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr1:227259000-227280600 Weak transcription HepG2 liver
21 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
22 chr1:227260000-227278600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:227260200-227278600 Weak transcription Stomach Smooth Muscle stomach
24 chr1:227260200-227281800 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:227260400-227287800 Weak transcription NHEK skin
26 chr1:227261400-227287800 Weak transcription Osteobl bone
27 chr1:227268600-227278600 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:227268800-227287000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:227271800-227278600 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:227271800-227278600 Weak transcription Brain Anterior Caudate brain
31 chr1:227271800-227278800 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:227271800-227279800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:227271800-227279800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:227271800-227286600 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:227271800-227286800 Weak transcription NHDF-Ad bronchial
36 chr1:227271800-227287800 Weak transcription Rectal Smooth Muscle rectum
37 chr1:227271800-227288000 Weak transcription H1 Cell Line embryonic stem cell
38 chr1:227271800-227299600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr1:227272000-227285800 Weak transcription Muscle Satellite Cultured Cells --
40 chr1:227272400-227279400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:227272600-227286400 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr1:227272600-227294400 Weak transcription Fetal Heart heart
43 chr1:227272800-227282400 Weak transcription Gastric stomach
44 chr1:227272800-227285200 Weak transcription Psoas Muscle Psoas
45 chr1:227272800-227295000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:227272800-227295000 Weak transcription Primary hematopoietic stem cells blood
47 chr1:227272800-227331000 Weak transcription Lung lung
48 chr1:227273000-227278800 Weak transcription Fetal Muscle Leg muscle
49 chr1:227273000-227286400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:227273000-227312400 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015