The 2.0 version of rSNPBase

Variant report

Variant rs501772
Chromosome Location chr1:227281557-227281558
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:227214800-227329200 Weak transcription Right Ventricle heart
4 chr1:227216800-227287600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:227220600-227288000 Weak transcription Colon Smooth Muscle Colon
6 chr1:227226800-227285600 Weak transcription Brain Germinal Matrix brain
7 chr1:227227000-227282200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:227227400-227284200 Weak transcription Brain Angular Gyrus brain
9 chr1:227236000-227286200 Weak transcription Fetal Brain Male brain
10 chr1:227240000-227286800 Weak transcription Brain Cingulate Gyrus brain
11 chr1:227247400-227299800 Weak transcription HMEC breast
12 chr1:227251000-227300000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:227257600-227288000 Weak transcription HSMMtube muscle
14 chr1:227257800-227312200 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
16 chr1:227260200-227281800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:227260400-227287800 Weak transcription NHEK skin
18 chr1:227261400-227287800 Weak transcription Osteobl bone
19 chr1:227268800-227287000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr1:227271800-227286600 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:227271800-227286800 Weak transcription NHDF-Ad bronchial
22 chr1:227271800-227287800 Weak transcription Rectal Smooth Muscle rectum
23 chr1:227271800-227288000 Weak transcription H1 Cell Line embryonic stem cell
24 chr1:227271800-227299600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr1:227272000-227285800 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:227272600-227286400 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:227272600-227294400 Weak transcription Fetal Heart heart
28 chr1:227272800-227282400 Weak transcription Gastric stomach
29 chr1:227272800-227285200 Weak transcription Psoas Muscle Psoas
30 chr1:227272800-227295000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:227272800-227295000 Weak transcription Primary hematopoietic stem cells blood
32 chr1:227272800-227331000 Weak transcription Lung lung
33 chr1:227273000-227286400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:227273000-227312400 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:227274600-227285200 Weak transcription Left Ventricle heart
36 chr1:227275400-227287000 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr1:227275800-227302600 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr1:227276000-227282000 Weak transcription A549 lung
39 chr1:227277000-227288600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:227277200-227286400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:227277200-227302600 Weak transcription Brain Substantia Nigra brain
42 chr1:227278800-227283000 Strong transcription K562 blood
43 chr1:227279000-227282600 Weak transcription HSMM muscle
44 chr1:227279000-227284200 Weak transcription Brain Inferior Temporal Lobe brain
45 chr1:227279200-227282000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:227279200-227282800 Enhancers Stomach Mucosa stomach
47 chr1:227279200-227284400 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr1:227279200-227284600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:227279200-227286000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:227279200-227286000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015