The 2.0 version of rSNPBase

Variant report

Variant rs1343896
Chromosome Location chr1:227250184-227250185
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227177400-227255200 Weak transcription Small Intestine intestine
3 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
4 chr1:227190600-227272600 Weak transcription Lung lung
5 chr1:227203000-227278800 Weak transcription Pancreas Pancrea
6 chr1:227209000-227272400 Weak transcription Fetal Intestine Small intestine
7 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:227214800-227329200 Weak transcription Right Ventricle heart
9 chr1:227216800-227287600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:227217000-227264400 Weak transcription NHLF lung
11 chr1:227217000-227271400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:227217000-227278800 Weak transcription Placenta Placenta
13 chr1:227220600-227255800 Weak transcription Gastric stomach
14 chr1:227220600-227272600 Weak transcription Aorta Aorta
15 chr1:227220600-227288000 Weak transcription Colon Smooth Muscle Colon
16 chr1:227220800-227256800 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr1:227222000-227253000 Weak transcription Rectal Smooth Muscle rectum
18 chr1:227222600-227256800 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr1:227226600-227270800 Weak transcription Fetal Brain Female brain
20 chr1:227226800-227260400 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:227226800-227272400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:227226800-227278400 Weak transcription Brain Inferior Temporal Lobe brain
23 chr1:227226800-227285600 Weak transcription Brain Germinal Matrix brain
24 chr1:227227000-227256600 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr1:227227000-227272200 Weak transcription Fetal Heart heart
26 chr1:227227000-227282200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:227227400-227253000 Weak transcription Stomach Smooth Muscle stomach
28 chr1:227227400-227256400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:227227400-227256800 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:227227400-227259800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:227227400-227272400 Weak transcription Ovary ovary
32 chr1:227227400-227281200 Weak transcription Fetal Kidney kidney
33 chr1:227227400-227284200 Weak transcription Brain Angular Gyrus brain
34 chr1:227227600-227259200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:227228000-227277000 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:227232000-227256600 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr1:227232800-227279200 Weak transcription Stomach Mucosa stomach
38 chr1:227234200-227253000 Weak transcription Fetal Stomach stomach
39 chr1:227234400-227252800 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:227235400-227254400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:227235800-227253000 Weak transcription Duodenum Mucosa Duodenum
42 chr1:227235800-227256600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:227235800-227256800 Weak transcription A549 lung
44 chr1:227235800-227257000 Weak transcription NHDF-Ad bronchial
45 chr1:227235800-227271000 Weak transcription Fetal Muscle Leg muscle
46 chr1:227236000-227286200 Weak transcription Fetal Brain Male brain
47 chr1:227238200-227256800 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr1:227238400-227270600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:227238600-227278400 Weak transcription Brain Hippocampus Middle brain
50 chr1:227239800-227271200 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015