The 2.0 version of rSNPBase

Variant report

Variant rs3122331
Chromosome Location chr1:227319980-227319981
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227214800-227329200 Weak transcription Right Ventricle heart
2 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
3 chr1:227272800-227331000 Weak transcription Lung lung
4 chr1:227286400-227328200 Weak transcription Brain Germinal Matrix brain
5 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
6 chr1:227288000-227326400 Weak transcription A549 lung
7 chr1:227288200-227332400 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:227288400-227343000 Weak transcription Rectal Smooth Muscle rectum
9 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:227288600-227328200 Weak transcription Fetal Stomach stomach
11 chr1:227288600-227332400 Weak transcription NHLF lung
12 chr1:227288600-227333600 Weak transcription Esophagus oesophagus
13 chr1:227288800-227330000 Weak transcription NHDF-Ad bronchial
14 chr1:227295200-227346400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:227296400-227326200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:227296600-227326200 Weak transcription Fetal Lung lung
17 chr1:227298600-227351800 Weak transcription Hela-S3 cervix
18 chr1:227299800-227332600 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:227300000-227321800 Weak transcription Colon Smooth Muscle Colon
20 chr1:227300000-227325800 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:227300000-227326400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:227300000-227328600 Weak transcription Fetal Brain Female brain
23 chr1:227300000-227329200 Weak transcription Aorta Aorta
24 chr1:227300000-227333800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:227300200-227322000 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:227300200-227322600 Weak transcription Ovary ovary
28 chr1:227300200-227326200 Weak transcription Liver Liver
29 chr1:227300200-227326400 Weak transcription Stomach Smooth Muscle stomach
30 chr1:227300200-227334400 Weak transcription Stomach Mucosa stomach
31 chr1:227300600-227326600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:227307000-227326400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:227311000-227329200 Weak transcription Pancreas Pancrea
34 chr1:227311000-227329400 Weak transcription Fetal Intestine Small intestine
35 chr1:227313000-227322000 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr1:227313000-227326400 Weak transcription H9 Cell Line embryonic stem cell
37 chr1:227313600-227325600 Weak transcription Primary hematopoietic stem cells blood
38 chr1:227314000-227326800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr1:227314000-227327800 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:227314200-227321800 Weak transcription Brain Anterior Caudate brain
41 chr1:227314200-227326200 Weak transcription H1 Cell Line embryonic stem cell
42 chr1:227314200-227326400 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:227314200-227327800 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr1:227314200-227327800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr1:227314200-227329400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:227314400-227321800 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:227314600-227322600 Weak transcription Brain Substantia Nigra brain
48 chr1:227315600-227320400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:227316000-227322600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:227316000-227326200 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015