The 2.0 version of rSNPBase

Variant report

Variant rs1513623
Chromosome Location chr1:227338862-227338863
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227259400-227349000 Weak transcription Colonic Mucosa Colon
2 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
3 chr1:227288400-227343000 Weak transcription Rectal Smooth Muscle rectum
4 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:227295200-227346400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:227298600-227351800 Weak transcription Hela-S3 cervix
7 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:227316600-227352200 Weak transcription Gastric stomach
9 chr1:227317000-227374200 Weak transcription HepG2 liver
10 chr1:227323200-227342600 Weak transcription Colon Smooth Muscle Colon
11 chr1:227323200-227346400 Weak transcription Brain Substantia Nigra brain
12 chr1:227324200-227348400 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:227326600-227355200 Weak transcription Small Intestine intestine
14 chr1:227327000-227346200 Weak transcription NH-A brain
15 chr1:227327000-227346400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:227327000-227347600 Weak transcription Fetal Heart heart
17 chr1:227327200-227341200 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:227327200-227348200 Weak transcription Primary hematopoietic stem cells blood
19 chr1:227327200-227348200 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:227328000-227354400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:227328400-227350000 Weak transcription Fetal Brain Male brain
22 chr1:227328600-227351600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:227328800-227346200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:227328800-227354200 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:227329600-227358400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:227329600-227380000 Weak transcription Aorta Aorta
27 chr1:227329800-227348400 Weak transcription Fetal Brain Female brain
28 chr1:227331400-227346200 Weak transcription Pancreas Pancrea
29 chr1:227331600-227355000 Weak transcription Brain Anterior Caudate brain
30 chr1:227331600-227358400 Weak transcription Brain Cingulate Gyrus brain
31 chr1:227332200-227345800 Weak transcription Fetal Stomach stomach
32 chr1:227332400-227347400 Weak transcription Fetal Intestine Small intestine
33 chr1:227332800-227345800 Weak transcription Left Ventricle heart
34 chr1:227332800-227346000 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:227332800-227346200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:227332800-227346200 Weak transcription NHEK skin
37 chr1:227332800-227346400 Weak transcription Brain Angular Gyrus brain
38 chr1:227332800-227346400 Weak transcription Fetal Muscle Trunk muscle
39 chr1:227332800-227350000 Weak transcription HMEC breast
40 chr1:227332800-227350200 Weak transcription Lung lung
41 chr1:227332800-227354600 Weak transcription Ovary ovary
42 chr1:227333000-227346000 Weak transcription Duodenum Mucosa Duodenum
43 chr1:227333000-227346600 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:227333000-227349400 Weak transcription Placenta Placenta
45 chr1:227333200-227354800 Weak transcription Stomach Smooth Muscle stomach
46 chr1:227333400-227339000 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:227333400-227341200 Weak transcription Brain Hippocampus Middle brain
48 chr1:227333400-227342600 Weak transcription Fetal Kidney kidney
49 chr1:227333400-227342800 Weak transcription A549 lung
50 chr1:227333400-227344400 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015