The 2.0 version of rSNPBase

Variant report

Variant rs58162887
Chromosome Location chr1:215809556-215809557
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:215741800-215809800 Weak transcription Colonic Mucosa Colon
2 chr1:215787200-215810200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:215792400-215810200 Weak transcription Aorta Aorta
4 chr1:215792600-215809800 Weak transcription Pancreas Pancrea
5 chr1:215794400-215810000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:215794600-215809600 Weak transcription H1 Cell Line embryonic stem cell
7 chr1:215795800-215809600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:215796000-215809600 Weak transcription Fetal Lung lung
9 chr1:215797000-215809600 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:215797800-215810200 Weak transcription Left Ventricle heart
11 chr1:215805000-215809600 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:215805000-215809800 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:215805000-215811000 Enhancers Fetal Intestine Large intestine
14 chr1:215805200-215809600 Weak transcription Muscle Satellite Cultured Cells --
15 chr1:215805200-215809800 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr1:215805200-215809800 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr1:215805200-215809800 Weak transcription Esophagus oesophagus
18 chr1:215805600-215809600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:215806000-215813600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:215807600-215811000 Enhancers Fetal Intestine Small intestine
21 chr1:215808000-215809800 Enhancers Duodenum Mucosa Duodenum
22 chr1:215808600-215810000 Enhancers Rectal Mucosa Donor 31 rectum
23 chr1:215808800-215809800 Weak transcription Stomach Mucosa stomach
24 chr1:215809200-215809600 Flanking Active TSS Liver Liver
25 chr1:215809200-215810200 Enhancers Fetal Muscle Trunk muscle
26 chr1:215809200-215810600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
27 chr1:215809200-215810600 Enhancers Gastric stomach
28 chr1:215809400-215809600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:215809400-215809600 Flanking Active TSS Rectal Mucosa Donor 29 rectum
30 chr1:215809400-215809800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:215809400-215809800 Enhancers NHDF-Ad bronchial
32 chr1:215809400-215809800 Enhancers Osteobl bone
33 chr1:215809400-215810000 Enhancers Adipose Nuclei Adipose
34 chr1:215809400-215810000 Enhancers NHEK skin
35 chr1:215809400-215810400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:215809400-215810600 Enhancers ES-I3 Cell Line embryonic stem cell
37 chr1:215809400-215810600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:215809400-215810600 Enhancers Breast Myoepithelial Primary Cells Breast
39 chr1:215809400-215810600 Enhancers Placenta Placenta
40 chr1:215809400-215810800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:215809400-215810800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:215809400-215811000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:215809400-215811000 Flanking Active TSS HepG2 liver

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Last update: Aug 31, 2015