The 2.0 version of rSNPBase

Variant report

Variant rs58257972
Chromosome Location chr1:215799170-215799171
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:215741800-215809800 Weak transcription Colonic Mucosa Colon
2 chr1:215750000-215805000 Weak transcription Lung lung
3 chr1:215750200-215804400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:215750200-215809200 Weak transcription Gastric stomach
5 chr1:215755800-215804800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:215779400-215799200 Weak transcription Psoas Muscle Psoas
7 chr1:215782200-215799400 Weak transcription Fetal Heart heart
8 chr1:215786600-215809400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:215786800-215801000 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:215787200-215800600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:215787200-215810200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:215787600-215801800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:215789000-215799200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:215791000-215804400 Weak transcription Esophagus oesophagus
15 chr1:215791000-215805000 Weak transcription Fetal Intestine Small intestine
16 chr1:215791600-215799400 Weak transcription Right Ventricle heart
17 chr1:215792200-215800000 Strong transcription Liver Liver
18 chr1:215792400-215810200 Weak transcription Aorta Aorta
19 chr1:215792600-215801800 Weak transcription Fetal Stomach stomach
20 chr1:215792600-215802800 Weak transcription Fetal Brain Male brain
21 chr1:215792600-215804400 Weak transcription NHEK skin
22 chr1:215792600-215809800 Weak transcription Pancreas Pancrea
23 chr1:215793600-215804400 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr1:215794400-215801200 Weak transcription K562 blood
25 chr1:215794400-215802200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:215794400-215804200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:215794400-215804600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:215794400-215804600 Weak transcription HMEC breast
29 chr1:215794400-215810000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:215794600-215801000 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:215794600-215805000 Weak transcription HSMM muscle
32 chr1:215794600-215808600 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:215794600-215809600 Weak transcription H1 Cell Line embryonic stem cell
34 chr1:215794800-215799400 Weak transcription HSMMtube muscle
35 chr1:215794800-215801800 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:215794800-215804400 Weak transcription HepG2 liver
37 chr1:215794800-215805000 Weak transcription A549 lung
38 chr1:215794800-215805000 Weak transcription NHLF lung
39 chr1:215794800-215809400 Weak transcription Placenta Placenta
40 chr1:215795600-215800000 Strong transcription NHDF-Ad bronchial
41 chr1:215795600-215800400 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:215795800-215809600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:215796000-215804400 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr1:215796000-215804800 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr1:215796000-215808000 Weak transcription Duodenum Mucosa Duodenum
46 chr1:215796000-215809600 Weak transcription Fetal Lung lung
47 chr1:215796200-215802800 Weak transcription NH-A brain
48 chr1:215796400-215802000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:215796400-215802600 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr1:215796800-215804800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015