Variant report

Variant	rs59636344
Chromosome Location	chr1:215724222-215724223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215722423..215724891-chr1:215740211..215742928,2	K562	blood:
2	chr1:215722423..215725926-chr1:215740211..215742928,3	K562	blood:

Variant related genes	Relation type
ENSG00000136636	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10127809	0.85[ASN][1000 genomes]
rs11120588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11120591	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12089271	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13376355	1.00[EUR][1000 genomes]
rs1557172	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024732	1.00[EUR][1000 genomes]
rs17024744	0.85[ASN][1000 genomes]
rs17024755	0.85[ASN][1000 genomes]
rs17024758	0.85[ASN][1000 genomes]
rs1819740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876408	1.00[EUR][1000 genomes]
rs2677113	0.89[ASN][1000 genomes]
rs2797392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885989	0.85[ASN][1000 genomes]
rs35134381	0.85[ASN][1000 genomes]
rs3753837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767252	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3767260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41304083	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41308435	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41315587	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4607849	0.85[ASN][1000 genomes]
rs56783105	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56802573	1.00[AMR][1000 genomes]
rs56956076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56957283	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57179404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57309511	0.85[ASN][1000 genomes]
rs57311096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57379455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57397989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57563355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57628126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57758604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57861859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57935471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58162887	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58163611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58257972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58330534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58342290	1.00[EUR][1000 genomes]
rs58425452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58542168	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58557470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58594611	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58597977	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58629829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58649725	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58682085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58759277	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58836680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58867901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58919310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59015398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59026507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59040705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59192192	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59233975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59319848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59577074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59628625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59635576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60026262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60365921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60404320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60533889	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60590154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60620576	0.85[ASN][1000 genomes]
rs61059263	1.00[EUR][1000 genomes]
rs61368758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61502956	0.96[ASN][1000 genomes]
rs61522423	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61600848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61618553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61633090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61685588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6540901	0.96[ASN][1000 genomes]
rs6689680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73083410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083421	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083429	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083436	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083437	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083461	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083470	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087423	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73087440	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087444	0.96[ASN][1000 genomes]
rs73087448	0.96[ASN][1000 genomes]
rs73087450	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087454	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087457	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087461	0.92[ASN][1000 genomes]
rs73087467	0.92[ASN][1000 genomes]
rs73090172	1.00[EUR][1000 genomes]
rs73090177	1.00[EUR][1000 genomes]
rs73090179	1.00[EUR][1000 genomes]
rs73091959	1.00[EUR][1000 genomes]
rs73091984	0.85[ASN][1000 genomes]
rs73091986	0.85[ASN][1000 genomes]
rs73091998	0.85[ASN][1000 genomes]
rs73094106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73094120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73094142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73100105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100110	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100116	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7531580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7545425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3411228	chr1:215704606-215742745	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv945291	chr1:215717059-215737649	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3334079	chr1:215717606-215745691	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links