Variant report

Variant	rs73087467
Chromosome Location	chr1:215830688-215830689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11120588	0.89[ASN][1000 genomes]
rs11120591	0.89[ASN][1000 genomes]
rs12089271	0.89[ASN][1000 genomes]
rs1557172	0.89[ASN][1000 genomes]
rs1819740	0.92[ASN][1000 genomes]
rs2677113	0.89[ASN][1000 genomes]
rs2797392	0.92[ASN][1000 genomes]
rs3753837	0.92[ASN][1000 genomes]
rs3753838	0.92[ASN][1000 genomes]
rs3767251	0.96[ASN][1000 genomes]
rs3767252	0.96[ASN][1000 genomes]
rs3767253	0.96[ASN][1000 genomes]
rs3767256	0.92[ASN][1000 genomes]
rs3767258	0.92[ASN][1000 genomes]
rs3767259	0.92[ASN][1000 genomes]
rs3767260	0.92[ASN][1000 genomes]
rs3767262	0.92[ASN][1000 genomes]
rs41304083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41308435	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41315587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56783105	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56956076	0.89[ASN][1000 genomes]
rs56957283	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57179404	0.85[ASN][1000 genomes]
rs57311096	0.96[ASN][1000 genomes]
rs57397989	0.92[ASN][1000 genomes]
rs57563355	0.92[ASN][1000 genomes]
rs57628126	0.89[ASN][1000 genomes]
rs57758604	0.89[ASN][1000 genomes]
rs57861859	0.92[ASN][1000 genomes]
rs57935471	0.92[ASN][1000 genomes]
rs58102262	0.92[ASN][1000 genomes]
rs58162887	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58257972	0.96[ASN][1000 genomes]
rs58330534	0.89[ASN][1000 genomes]
rs58425452	0.89[ASN][1000 genomes]
rs58542168	0.89[ASN][1000 genomes]
rs58557470	0.89[ASN][1000 genomes]
rs58594611	0.89[ASN][1000 genomes]
rs58597977	0.89[ASN][1000 genomes]
rs58649725	0.89[ASN][1000 genomes]
rs58682085	0.92[ASN][1000 genomes]
rs58759277	0.96[ASN][1000 genomes]
rs58836680	0.89[ASN][1000 genomes]
rs58867901	0.92[ASN][1000 genomes]
rs58919310	0.89[ASN][1000 genomes]
rs59015398	0.92[ASN][1000 genomes]
rs59026507	0.92[ASN][1000 genomes]
rs59192192	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59233975	0.89[ASN][1000 genomes]
rs59319848	0.96[ASN][1000 genomes]
rs59577074	0.81[ASN][1000 genomes]
rs59635576	0.92[ASN][1000 genomes]
rs59636344	0.92[ASN][1000 genomes]
rs60365921	0.89[ASN][1000 genomes]
rs60533889	0.96[ASN][1000 genomes]
rs60590154	0.96[ASN][1000 genomes]
rs61368758	0.89[ASN][1000 genomes]
rs61502956	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61522423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61633090	0.89[ASN][1000 genomes]
rs61685588	0.89[ASN][1000 genomes]
rs6540901	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6689680	0.92[ASN][1000 genomes]
rs6700397	0.92[ASN][1000 genomes]
rs73081443	0.89[ASN][1000 genomes]
rs73081447	0.89[ASN][1000 genomes]
rs73081459	0.89[ASN][1000 genomes]
rs73081470	0.89[ASN][1000 genomes]
rs73081479	0.89[ASN][1000 genomes]
rs73081487	0.89[ASN][1000 genomes]
rs73081497	0.89[ASN][1000 genomes]
rs73083403	0.82[ASN][1000 genomes]
rs73083410	0.89[ASN][1000 genomes]
rs73083415	0.89[ASN][1000 genomes]
rs73083420	0.89[ASN][1000 genomes]
rs73083421	0.89[ASN][1000 genomes]
rs73083429	0.89[ASN][1000 genomes]
rs73083436	0.89[ASN][1000 genomes]
rs73083437	0.89[ASN][1000 genomes]
rs73083461	0.89[ASN][1000 genomes]
rs73083470	0.89[ASN][1000 genomes]
rs73083500	0.92[ASN][1000 genomes]
rs73085404	0.92[ASN][1000 genomes]
rs73085410	0.92[ASN][1000 genomes]
rs73087423	0.85[ASN][1000 genomes]
rs73087440	0.96[ASN][1000 genomes]
rs73087444	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087448	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087450	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087454	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087457	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087461	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094142	0.85[ASN][1000 genomes]
rs73100105	0.89[ASN][1000 genomes]
rs73100108	0.89[ASN][1000 genomes]
rs73100110	0.89[ASN][1000 genomes]
rs73100116	0.89[ASN][1000 genomes]
rs73100129	0.89[ASN][1000 genomes]
rs73100141	0.89[ASN][1000 genomes]
rs7531580	0.96[ASN][1000 genomes]
rs7545425	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215830600-215831200	Enhancers	Liver	Liver

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