Variant report

Variant	rs61502956
Chromosome Location	chr1:215813105-215813106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215812880..215814453-chr1:215814615..215816818,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11120588	0.92[ASN][1000 genomes]
rs11120591	0.92[ASN][1000 genomes]
rs12089271	0.92[ASN][1000 genomes]
rs1557172	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1819740	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2677113	0.85[ASN][1000 genomes]
rs2797392	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3753837	0.96[ASN][1000 genomes]
rs3753838	0.96[ASN][1000 genomes]
rs3767251	1.00[ASN][1000 genomes]
rs3767252	1.00[ASN][1000 genomes]
rs3767253	1.00[ASN][1000 genomes]
rs3767256	0.96[ASN][1000 genomes]
rs3767258	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3767259	0.96[ASN][1000 genomes]
rs3767260	0.96[ASN][1000 genomes]
rs3767262	0.96[ASN][1000 genomes]
rs41304083	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41308435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41315587	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56783105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56956076	0.92[ASN][1000 genomes]
rs56957283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57179404	0.89[ASN][1000 genomes]
rs57311096	1.00[ASN][1000 genomes]
rs57397989	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57563355	0.96[ASN][1000 genomes]
rs57628126	0.92[ASN][1000 genomes]
rs57758604	0.92[ASN][1000 genomes]
rs57861859	0.96[ASN][1000 genomes]
rs57935471	0.96[ASN][1000 genomes]
rs58102262	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58162887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58257972	1.00[ASN][1000 genomes]
rs58330534	0.92[ASN][1000 genomes]
rs58425452	0.92[ASN][1000 genomes]
rs58542168	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58557470	0.92[ASN][1000 genomes]
rs58594611	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58597977	0.92[ASN][1000 genomes]
rs58629829	0.92[ASN][1000 genomes]
rs58649725	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58682085	0.96[ASN][1000 genomes]
rs58759277	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58836680	0.92[ASN][1000 genomes]
rs58867901	0.96[ASN][1000 genomes]
rs58919310	0.92[ASN][1000 genomes]
rs59015398	0.96[ASN][1000 genomes]
rs59026507	0.96[ASN][1000 genomes]
rs59040705	0.92[ASN][1000 genomes]
rs59192192	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59233975	0.92[ASN][1000 genomes]
rs59319848	1.00[ASN][1000 genomes]
rs59577074	0.84[ASN][1000 genomes]
rs59635576	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59636344	0.96[ASN][1000 genomes]
rs60365921	0.92[ASN][1000 genomes]
rs60404320	0.84[ASN][1000 genomes]
rs60533889	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60590154	1.00[ASN][1000 genomes]
rs60620576	0.81[ASN][1000 genomes]
rs61368758	0.92[ASN][1000 genomes]
rs61522423	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61600848	0.81[ASN][1000 genomes]
rs61633090	0.92[ASN][1000 genomes]
rs61685588	0.92[ASN][1000 genomes]
rs6540901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689680	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6700397	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73081443	0.92[ASN][1000 genomes]
rs73081447	0.92[ASN][1000 genomes]
rs73081459	0.92[ASN][1000 genomes]
rs73081470	0.92[ASN][1000 genomes]
rs73081479	0.92[ASN][1000 genomes]
rs73081487	0.92[ASN][1000 genomes]
rs73081497	0.92[ASN][1000 genomes]
rs73083403	0.85[ASN][1000 genomes]
rs73083410	0.92[ASN][1000 genomes]
rs73083415	0.92[ASN][1000 genomes]
rs73083420	0.92[ASN][1000 genomes]
rs73083421	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083429	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083436	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083437	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083461	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083470	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083500	0.96[ASN][1000 genomes]
rs73085404	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73085410	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087423	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73087440	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73087444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087461	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087467	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73091998	0.81[ASN][1000 genomes]
rs73094106	0.81[ASN][1000 genomes]
rs73094120	0.92[ASN][1000 genomes]
rs73094142	0.89[ASN][1000 genomes]
rs73100105	0.92[ASN][1000 genomes]
rs73100108	0.92[ASN][1000 genomes]
rs73100110	0.92[ASN][1000 genomes]
rs73100116	0.92[ASN][1000 genomes]
rs73100129	0.92[ASN][1000 genomes]
rs73100141	0.92[ASN][1000 genomes]
rs7531580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7545425	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215806000-215813600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:215810600-215820000	Weak transcription	Left Ventricle	heart
3	chr1:215810800-215821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:215810800-215823000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:215811400-215820600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:215811800-215813200	Weak transcription	Stomach Mucosa	stomach
7	chr1:215813000-215814600	Flanking Active TSS	Liver	Liver

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