Variant report

Variant	rs73087454
Chromosome Location	chr1:215817090-215817091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215816772..215818915-chr1:215831158..215833627,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs11120588	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11120591	0.92[ASN][1000 genomes]
rs12089271	0.92[ASN][1000 genomes]
rs1557172	0.92[ASN][1000 genomes]
rs1819740	0.96[ASN][1000 genomes]
rs2677113	0.85[ASN][1000 genomes]
rs2797392	0.96[ASN][1000 genomes]
rs3753837	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3753838	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3767251	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3767252	1.00[ASN][1000 genomes]
rs3767253	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3767256	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3767258	0.96[ASN][1000 genomes]
rs3767259	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3767260	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3767262	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41304083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41308435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41315587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56783105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56956076	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56957283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57179404	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57311096	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57397989	0.96[ASN][1000 genomes]
rs57563355	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57628126	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57758604	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57861859	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57935471	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58102262	0.96[ASN][1000 genomes]
rs58162887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58257972	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58330534	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58425452	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58542168	0.92[ASN][1000 genomes]
rs58557470	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58594611	0.92[ASN][1000 genomes]
rs58597977	0.92[ASN][1000 genomes]
rs58629829	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58649725	0.92[ASN][1000 genomes]
rs58682085	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58759277	1.00[ASN][1000 genomes]
rs58836680	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58867901	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58919310	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59015398	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59026507	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59040705	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59192192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59233975	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59319848	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59577074	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59635576	0.96[ASN][1000 genomes]
rs59636344	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60365921	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60404320	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60533889	1.00[ASN][1000 genomes]
rs60590154	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60620576	0.81[ASN][1000 genomes]
rs61368758	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61502956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61522423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61633090	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61685588	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6540901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689680	0.96[ASN][1000 genomes]
rs6700397	0.96[ASN][1000 genomes]
rs73081443	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081447	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081459	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081470	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081479	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081487	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73081497	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083403	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73083410	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083415	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083420	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73083421	0.92[ASN][1000 genomes]
rs73083429	0.92[ASN][1000 genomes]
rs73083436	0.92[ASN][1000 genomes]
rs73083437	0.92[ASN][1000 genomes]
rs73083461	0.92[ASN][1000 genomes]
rs73083470	0.92[ASN][1000 genomes]
rs73083500	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73085404	0.96[ASN][1000 genomes]
rs73085410	0.96[ASN][1000 genomes]
rs73087423	0.88[ASN][1000 genomes]
rs73087440	1.00[ASN][1000 genomes]
rs73087444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087461	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087467	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73094120	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73094142	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73100105	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73100108	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73100110	0.92[ASN][1000 genomes]
rs73100116	0.92[ASN][1000 genomes]
rs73100129	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73100141	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7531580	1.00[ASN][1000 genomes]
rs7545425	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215810600-215820000	Weak transcription	Left Ventricle	heart
2	chr1:215810800-215821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:215810800-215823000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:215811400-215820600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:215816800-215817200	Flanking Active TSS	Liver	Liver
6	chr1:215816800-215817800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links