Variant report

Variant	rs58867901
Chromosome Location	chr1:215786906-215786907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215769453..215771930-chr1:215786614..215789259,2	MCF-7	breast:

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10127809	0.85[ASN][1000 genomes]
rs11120588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11120591	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12089271	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557172	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024755	0.85[ASN][1000 genomes]
rs17024758	0.85[ASN][1000 genomes]
rs1819740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677113	0.89[ASN][1000 genomes]
rs2797392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885989	0.85[ASN][1000 genomes]
rs35134381	0.85[ASN][1000 genomes]
rs3753837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767252	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3767260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41304083	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41308435	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41315587	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4607849	0.85[ASN][1000 genomes]
rs56783105	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56956076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56957283	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57179404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57309511	0.85[ASN][1000 genomes]
rs57311096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57379455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57397989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57563355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57628126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57758604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57861859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57935471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58162887	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58163611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58257972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58330534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58425452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58542168	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58557470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58594611	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58597977	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58629829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58649725	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58682085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58759277	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58836680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58919310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59015398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59026507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59040705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59192192	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59233975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59319848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59577074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59628625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59635576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59636344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60026262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60365921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60404320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60533889	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60590154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60620576	0.85[ASN][1000 genomes]
rs61368758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61502956	0.96[ASN][1000 genomes]
rs61522423	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61600848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61633090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61685588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6540901	0.96[ASN][1000 genomes]
rs6689680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73083410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083421	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083429	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083436	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083437	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083461	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083470	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087423	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73087440	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087444	0.96[ASN][1000 genomes]
rs73087448	0.96[ASN][1000 genomes]
rs73087450	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087454	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087457	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087461	0.92[ASN][1000 genomes]
rs73087467	0.92[ASN][1000 genomes]
rs73091984	0.85[ASN][1000 genomes]
rs73091986	0.85[ASN][1000 genomes]
rs73091998	0.85[ASN][1000 genomes]
rs73094106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73094120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73094142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73100105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100110	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100116	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7531580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7545425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215741800-215809800	Weak transcription	Colonic Mucosa	Colon
2	chr1:215750000-215805000	Weak transcription	Lung	lung
3	chr1:215750200-215790400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:215750200-215795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:215750200-215796000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:215750200-215804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:215750200-215809200	Weak transcription	Gastric	stomach
8	chr1:215753200-215792200	Weak transcription	Aorta	Aorta
9	chr1:215755800-215804800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:215765200-215790400	Weak transcription	Esophagus	oesophagus
11	chr1:215768000-215791800	Weak transcription	Fetal Brain Male	brain
12	chr1:215768400-215790600	Weak transcription	Right Ventricle	heart
13	chr1:215773000-215790400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:215773600-215792400	Weak transcription	Brain Angular Gyrus	brain
15	chr1:215773800-215798600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:215774000-215795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:215777200-215792200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:215778800-215791600	Weak transcription	Brain Substantia Nigra	brain
19	chr1:215779400-215792200	Weak transcription	Ovary	ovary
20	chr1:215779400-215792400	Weak transcription	HMEC	breast
21	chr1:215779400-215793400	Weak transcription	NHLF	lung
22	chr1:215779400-215799200	Weak transcription	Psoas Muscle	Psoas
23	chr1:215780000-215794000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr1:215780800-215787200	Strong transcription	NHDF-Ad	bronchial
25	chr1:215780800-215788400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:215780800-215789400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:215781000-215787200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:215781000-215787400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:215781000-215787400	Strong transcription	HSMM	muscle
30	chr1:215781000-215787800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:215781000-215797200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:215781200-215787400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:215781200-215788000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:215781200-215788000	Strong transcription	A549	lung
35	chr1:215781200-215788400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:215781200-215794800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:215781200-215797400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:215781400-215787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:215782200-215799400	Weak transcription	Fetal Heart	heart
40	chr1:215782800-215790800	Weak transcription	GM12878-XiMat	blood
41	chr1:215782800-215797200	Weak transcription	Dnd41	blood
42	chr1:215783000-215798800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr1:215783600-215787400	Strong transcription	Liver	Liver
44	chr1:215784000-215787400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr1:215784200-215787400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:215784200-215793800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr1:215784200-215795200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr1:215784600-215787400	Strong transcription	Placenta	Placenta
49	chr1:215784800-215787400	Strong transcription	Osteobl	bone
50	chr1:215784800-215796600	Weak transcription	Spleen	Spleen

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