The 2.0 version of rSNPBase

Variant report

Variant rs10170538
Chromosome Location chr2:20516472-20516473
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20460200-20528600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:20466000-20530400 Strong transcription Fetal Thymus thymus
3 chr2:20467000-20522400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
4 chr2:20467200-20526200 Strong transcription Primary monocytes fromperipheralblood blood
5 chr2:20471800-20522600 Strong transcription Monocytes-CD14+_RO01746 blood
6 chr2:20471800-20533800 Strong transcription Dnd41 blood
7 chr2:20474600-20528600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr2:20475400-20522400 Strong transcription Primary neutrophils fromperipheralblood blood
9 chr2:20476400-20521000 Strong transcription Fetal Intestine Large intestine
10 chr2:20476600-20524800 Strong transcription Primary hematopoietic stem cells short term culture blood
11 chr2:20476600-20526600 Strong transcription Rectal Mucosa Donor 29 rectum
12 chr2:20476800-20516800 Strong transcription Primary B cells from peripheral blood blood
13 chr2:20478600-20516600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr2:20483200-20520200 Strong transcription Duodenum Mucosa Duodenum
15 chr2:20488400-20516800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr2:20488400-20517000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr2:20489400-20517400 Weak transcription Psoas Muscle Psoas
18 chr2:20489800-20525800 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr2:20491400-20522600 Strong transcription HepG2 liver
20 chr2:20492400-20525800 Strong transcription Liver Liver
21 chr2:20497400-20516600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr2:20499200-20527600 Weak transcription Small Intestine intestine
23 chr2:20500200-20522400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr2:20501000-20519600 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr2:20501600-20525000 Strong transcription Placenta Placenta
26 chr2:20503000-20534600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr2:20505200-20517400 Strong transcription Primary B cells from cord blood blood
28 chr2:20505200-20526000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr2:20505200-20526600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr2:20505600-20518200 Strong transcription Fetal Brain Female brain
31 chr2:20505600-20523400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:20506200-20519600 Strong transcription HSMM muscle
33 chr2:20507200-20519400 Strong transcription K562 blood
34 chr2:20507800-20527600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr2:20508400-20516800 Weak transcription Pancreas Pancrea
36 chr2:20508400-20522000 Weak transcription Lung lung
37 chr2:20510200-20518400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
38 chr2:20510800-20519400 Strong transcription Fetal Muscle Trunk muscle
39 chr2:20510800-20519800 Strong transcription Fetal Lung lung
40 chr2:20511200-20520000 Strong transcription Fetal Muscle Leg muscle
41 chr2:20511800-20517400 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr2:20511800-20520800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr2:20512200-20517000 Weak transcription HMEC breast
44 chr2:20512200-20517400 Weak transcription Fetal Brain Male brain
45 chr2:20513200-20517000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
46 chr2:20513200-20518200 Strong transcription Fetal Intestine Small intestine
47 chr2:20513200-20518200 Strong transcription Fetal Stomach stomach
48 chr2:20513200-20520000 Strong transcription Thymus Thymus
49 chr2:20513400-20516800 Strong transcription Primary T helper naive cells from peripheral blood blood
50 chr2:20513600-20516800 Strong transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015