The 2.0 version of rSNPBase

Variant report

Variant rs62124601
Chromosome Location chr2:20543648-20543649
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20523000-20547600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr2:20524400-20546400 Weak transcription NH-A brain
3 chr2:20526000-20544800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr2:20527800-20544800 Weak transcription Placenta Placenta
5 chr2:20527800-20548200 Weak transcription Placenta Amnion Placenta Amnion
6 chr2:20527800-20549200 Weak transcription Aorta Aorta
7 chr2:20528200-20546600 Weak transcription Hela-S3 cervix
8 chr2:20528600-20546400 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr2:20530800-20546200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr2:20531000-20544600 Weak transcription Fetal Brain Male brain
11 chr2:20531000-20549200 Weak transcription H9 Cell Line embryonic stem cell
12 chr2:20531200-20546400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr2:20531400-20546400 Weak transcription Fetal Kidney kidney
14 chr2:20531400-20547800 Weak transcription Fetal Muscle Trunk muscle
15 chr2:20531800-20547400 Weak transcription Fetal Muscle Leg muscle
16 chr2:20532000-20547400 Weak transcription Primary monocytes fromperipheralblood blood
17 chr2:20532400-20545400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr2:20533400-20543800 Weak transcription Primary hematopoietic stem cells blood
19 chr2:20533800-20545200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr2:20533800-20549400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr2:20534800-20547400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr2:20535000-20545600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr2:20535000-20547400 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr2:20535200-20546600 Weak transcription NHEK skin
25 chr2:20536200-20545000 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr2:20536200-20545800 Weak transcription Fetal Lung lung
27 chr2:20536200-20546200 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr2:20536200-20546200 Weak transcription Brain Angular Gyrus brain
29 chr2:20536200-20546400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr2:20536200-20546600 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr2:20536200-20546600 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr2:20536400-20546400 Weak transcription Adipose Nuclei Adipose
33 chr2:20536400-20547600 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr2:20536600-20543800 Weak transcription Lung lung
35 chr2:20536600-20544800 Weak transcription Thymus Thymus
36 chr2:20536600-20547400 Weak transcription HMEC breast
37 chr2:20536800-20544800 Weak transcription Fetal Thymus thymus
38 chr2:20536800-20546400 Weak transcription Osteobl bone
39 chr2:20537200-20546200 Weak transcription NHDF-Ad bronchial
40 chr2:20537200-20546400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr2:20537600-20546200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:20537800-20546200 Weak transcription Muscle Satellite Cultured Cells --
43 chr2:20537800-20547400 Weak transcription Brain Hippocampus Middle brain
44 chr2:20538000-20545000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr2:20538400-20547400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr2:20538600-20545200 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr2:20539000-20543800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr2:20539200-20546600 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr2:20539400-20546400 Weak transcription HUVEC blood vessel
50 chr2:20539800-20544200 Enhancers Liver Liver

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Last update: Aug 31, 2015