Variant report

Variant	rs13421653
Chromosome Location	chr2:20576545-20576546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20569485..20571465-chr2:20575871..20577698,2	K562	blood:
2	chr2:20574805..20576897-chr2:20646871..20649398,2	MCF-7	breast:
3	chr2:20550361..20552258-chr2:20575923..20578535,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055917	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10153828	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10167509	1.00[ASN][1000 genomes]
rs10168575	1.00[ASN][1000 genomes]
rs10170538	1.00[ASN][1000 genomes]
rs10171025	1.00[ASN][1000 genomes]
rs10171861	1.00[ASN][1000 genomes]
rs10172088	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10173098	1.00[ASN][1000 genomes]
rs10174768	1.00[ASN][1000 genomes]
rs10176257	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177428	1.00[ASN][1000 genomes]
rs10178561	1.00[ASN][1000 genomes]
rs10179429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10182156	1.00[ASN][1000 genomes]
rs10182228	1.00[ASN][1000 genomes]
rs10182834	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10184976	1.00[ASN][1000 genomes]
rs10189781	1.00[ASN][1000 genomes]
rs10193751	1.00[CEU][hapmap]
rs10194789	1.00[ASN][1000 genomes]
rs10195153	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195817	1.00[ASN][1000 genomes]
rs10197941	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10198897	1.00[ASN][1000 genomes]
rs10204489	1.00[ASN][1000 genomes]
rs10207798	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10208668	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390701	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13391140	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13398963	1.00[ASN][1000 genomes]
rs13409830	1.00[ASN][1000 genomes]
rs13412971	1.00[ASN][1000 genomes]
rs13425933	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426989	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13429586	1.00[ASN][1000 genomes]
rs28732678	1.00[ASN][1000 genomes]
rs55904622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56337814	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57065686	1.00[ASN][1000 genomes]
rs57459161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58774661	1.00[ASN][1000 genomes]
rs59901600	1.00[ASN][1000 genomes]
rs60984167	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62111434	1.00[ASN][1000 genomes]
rs62111435	1.00[ASN][1000 genomes]
rs62111436	1.00[ASN][1000 genomes]
rs62111437	1.00[ASN][1000 genomes]
rs62111439	1.00[ASN][1000 genomes]
rs62123438	1.00[ASN][1000 genomes]
rs62123439	1.00[ASN][1000 genomes]
rs62123441	1.00[ASN][1000 genomes]
rs62123443	1.00[ASN][1000 genomes]
rs62123444	1.00[ASN][1000 genomes]
rs62123446	1.00[ASN][1000 genomes]
rs62123448	1.00[ASN][1000 genomes]
rs62123450	1.00[ASN][1000 genomes]
rs62123453	1.00[ASN][1000 genomes]
rs62123454	1.00[ASN][1000 genomes]
rs62123455	1.00[ASN][1000 genomes]
rs62123456	1.00[ASN][1000 genomes]
rs62123458	1.00[ASN][1000 genomes]
rs62124592	1.00[ASN][1000 genomes]
rs62124596	1.00[ASN][1000 genomes]
rs62124597	1.00[ASN][1000 genomes]
rs62124598	1.00[ASN][1000 genomes]
rs62124599	1.00[ASN][1000 genomes]
rs62124600	1.00[ASN][1000 genomes]
rs62124601	1.00[ASN][1000 genomes]
rs62124602	1.00[ASN][1000 genomes]
rs62124604	1.00[ASN][1000 genomes]
rs6715475	1.00[ASN][1000 genomes]
rs6744963	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs73214391	1.00[ASN][1000 genomes]
rs73214393	1.00[ASN][1000 genomes]
rs73216207	1.00[ASN][1000 genomes]
rs73216223	1.00[ASN][1000 genomes]
rs73216230	1.00[ASN][1000 genomes]
rs73216236	1.00[ASN][1000 genomes]
rs73218112	1.00[ASN][1000 genomes]
rs73218122	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218124	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218129	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218135	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741189	1.00[CEU][hapmap]
rs7565347	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7589484	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759220	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759221	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9653390	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808229	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20570200-20578600	Weak transcription	Ovary	ovary
3	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
4	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
5	chr2:20575000-20578600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:20575200-20576800	Weak transcription	Aorta	Aorta
7	chr2:20575200-20578600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:20575400-20578200	Weak transcription	Placenta	Placenta
9	chr2:20575400-20581000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:20576200-20578400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:20576400-20578000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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