The 2.0 version of rSNPBase

Variant report

Variant rs62124596
Chromosome Location chr2:20534543-20534544
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20503000-20534600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr2:20516800-20536000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr2:20521400-20534600 Weak transcription Stomach Mucosa stomach
4 chr2:20522800-20537400 Weak transcription NHLF lung
5 chr2:20523000-20536000 Weak transcription HMEC breast
6 chr2:20523000-20547600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr2:20523200-20536000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr2:20523200-20536000 Weak transcription Lung lung
9 chr2:20523600-20537000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr2:20524400-20546400 Weak transcription NH-A brain
11 chr2:20526000-20534600 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr2:20526000-20544800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr2:20526400-20534600 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr2:20526600-20539400 Weak transcription HSMM muscle
15 chr2:20526800-20538200 Weak transcription HUVEC blood vessel
16 chr2:20527000-20535200 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr2:20527800-20534600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr2:20527800-20544800 Weak transcription Placenta Placenta
19 chr2:20527800-20548200 Weak transcription Placenta Amnion Placenta Amnion
20 chr2:20527800-20549200 Weak transcription Aorta Aorta
21 chr2:20528000-20534600 Weak transcription Ovary ovary
22 chr2:20528000-20536000 Weak transcription Pancreas Pancrea
23 chr2:20528200-20536000 Weak transcription Esophagus oesophagus
24 chr2:20528200-20546600 Weak transcription Hela-S3 cervix
25 chr2:20528600-20536200 ZNF genes & repeats GM12878-XiMat blood
26 chr2:20528600-20546400 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr2:20529200-20536400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr2:20530400-20534600 Weak transcription Osteobl bone
29 chr2:20530600-20536000 Weak transcription NHDF-Ad bronchial
30 chr2:20530800-20534600 Weak transcription Brain Substantia Nigra brain
31 chr2:20530800-20534600 Weak transcription Spleen Spleen
32 chr2:20530800-20535800 Weak transcription H1 Cell Line embryonic stem cell
33 chr2:20530800-20540000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr2:20530800-20546200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr2:20531000-20534600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:20531000-20534600 Weak transcription Fetal Heart heart
37 chr2:20531000-20534600 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr2:20531000-20535000 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr2:20531000-20535400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr2:20531000-20539000 Weak transcription Fetal Brain Female brain
41 chr2:20531000-20544600 Weak transcription Fetal Brain Male brain
42 chr2:20531000-20549200 Weak transcription H9 Cell Line embryonic stem cell
43 chr2:20531200-20534600 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr2:20531200-20534600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr2:20531200-20534600 Weak transcription A549 lung
46 chr2:20531200-20534800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr2:20531200-20539000 Weak transcription Brain Germinal Matrix brain
48 chr2:20531200-20546400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr2:20531400-20534800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr2:20531400-20539400 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015