The 2.0 version of rSNPBase

Variant report

Variant rs13409830
Chromosome Location chr2:20468470-20468471
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20442000-20491000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr2:20442800-20474800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr2:20444400-20489000 Weak transcription Stomach Mucosa stomach
4 chr2:20445400-20473800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr2:20446400-20473600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr2:20447000-20468600 Strong transcription Primary T regulatory cells fromperipheralblood blood
7 chr2:20447000-20470200 Strong transcription Dnd41 blood
8 chr2:20452000-20481600 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr2:20454200-20471600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr2:20454200-20480800 Weak transcription Aorta Aorta
11 chr2:20454200-20480800 Weak transcription Psoas Muscle Psoas
12 chr2:20454200-20482800 Weak transcription Pancreas Pancrea
13 chr2:20454200-20488800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr2:20454200-20490800 Weak transcription Right Ventricle heart
15 chr2:20454200-20491000 Weak transcription Gastric stomach
16 chr2:20454200-20491000 Weak transcription Spleen Spleen
17 chr2:20454200-20499600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr2:20454400-20481600 Weak transcription Brain Angular Gyrus brain
19 chr2:20455400-20481600 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr2:20455400-20482600 Weak transcription Ovary ovary
21 chr2:20455800-20481600 Weak transcription Brain Cingulate Gyrus brain
22 chr2:20455800-20485000 Weak transcription Colonic Mucosa Colon
23 chr2:20456400-20482600 Weak transcription H9 Cell Line embryonic stem cell
24 chr2:20456400-20488800 Weak transcription Small Intestine intestine
25 chr2:20456600-20477800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr2:20458000-20491000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:20459800-20478000 Weak transcription Fetal Heart heart
28 chr2:20459800-20480800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr2:20459800-20481600 Weak transcription Brain Anterior Caudate brain
30 chr2:20459800-20481600 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr2:20460000-20476600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr2:20460000-20480600 Weak transcription Brain Hippocampus Middle brain
33 chr2:20460200-20481000 Weak transcription HMEC breast
34 chr2:20460200-20528600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr2:20460800-20471800 Weak transcription HSMMtube muscle
36 chr2:20460800-20480600 Weak transcription Rectal Smooth Muscle rectum
37 chr2:20460800-20481600 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr2:20460800-20485800 Weak transcription Fetal Brain Male brain
39 chr2:20461000-20480000 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr2:20461000-20481800 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr2:20461800-20469600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr2:20461800-20477800 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr2:20462200-20480800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr2:20462200-20482400 Weak transcription Brain Germinal Matrix brain
45 chr2:20462400-20480800 Weak transcription Left Ventricle heart
46 chr2:20462600-20477200 Weak transcription H1 Cell Line embryonic stem cell
47 chr2:20462600-20480800 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr2:20462600-20482200 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr2:20463000-20468600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr2:20463000-20476600 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015