Variant report

Variant	rs73218129
Chromosome Location	chr2:20567189-20567190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20565193..20568010-chr2:20578320..20581301,2	MCF-7	breast:
2	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
3	chr2:20550317..20552046-chr2:20565581..20567990,2	MCF-7	breast:
4	chr2:20565504..20567261-chr2:20848986..20850632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055917	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10153828	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10165087	0.89[AMR][1000 genomes]
rs10167509	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10168575	1.00[ASN][1000 genomes]
rs10170538	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10171025	1.00[ASN][1000 genomes]
rs10171861	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10172088	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10173098	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10174768	1.00[ASN][1000 genomes]
rs10176257	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177428	1.00[ASN][1000 genomes]
rs10178561	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10179429	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182156	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182228	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182834	1.00[ASN][1000 genomes]
rs10184976	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189781	1.00[ASN][1000 genomes]
rs10193751	0.89[AMR][1000 genomes]
rs10194789	1.00[ASN][1000 genomes]
rs10195153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195817	1.00[ASN][1000 genomes]
rs10197941	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10198897	1.00[ASN][1000 genomes]
rs10204489	1.00[ASN][1000 genomes]
rs10207798	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208668	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391140	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13398963	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13409830	1.00[ASN][1000 genomes]
rs13412971	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13421653	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425933	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426989	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13429586	1.00[ASN][1000 genomes]
rs28732678	1.00[ASN][1000 genomes]
rs55904622	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56337814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57065686	1.00[ASN][1000 genomes]
rs57459161	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58774661	1.00[ASN][1000 genomes]
rs59901600	1.00[ASN][1000 genomes]
rs60984167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62111434	1.00[ASN][1000 genomes]
rs62111435	1.00[ASN][1000 genomes]
rs62111436	1.00[ASN][1000 genomes]
rs62111437	1.00[ASN][1000 genomes]
rs62111439	1.00[ASN][1000 genomes]
rs62123438	1.00[ASN][1000 genomes]
rs62123439	1.00[ASN][1000 genomes]
rs62123441	1.00[ASN][1000 genomes]
rs62123443	1.00[ASN][1000 genomes]
rs62123444	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123446	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123448	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123450	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123451	0.89[AMR][1000 genomes]
rs62123453	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123454	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123455	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123456	1.00[ASN][1000 genomes]
rs62123458	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124592	1.00[ASN][1000 genomes]
rs62124596	1.00[ASN][1000 genomes]
rs62124597	1.00[ASN][1000 genomes]
rs62124598	1.00[ASN][1000 genomes]
rs62124599	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124600	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124601	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124602	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124604	1.00[ASN][1000 genomes]
rs6715475	1.00[ASN][1000 genomes]
rs6744963	1.00[ASN][1000 genomes]
rs73214391	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73214393	1.00[ASN][1000 genomes]
rs73216207	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216223	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216230	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216236	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73218112	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73218122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565347	1.00[ASN][1000 genomes]
rs7589484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9653390	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808229	1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20551600-20568800	Weak transcription	Psoas Muscle	Psoas
2	chr2:20556800-20569200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:20564400-20567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:20564400-20567200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:20564400-20567200	Enhancers	HMEC	breast
6	chr2:20564800-20567200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:20564800-20567200	Enhancers	NHEK	skin
8	chr2:20565000-20567200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:20565000-20570200	Enhancers	Placenta	Placenta
10	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:20565800-20569400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:20565800-20570000	Weak transcription	NHLF	lung
13	chr2:20565800-20575200	Weak transcription	NH-A	brain
14	chr2:20566000-20567200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr2:20566400-20567200	Enhancers	Esophagus	oesophagus
16	chr2:20566600-20567200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr2:20566600-20567600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:20567000-20571200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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