The 2.0 version of rSNPBase

Variant report

Variant rs62123438
Chromosome Location chr2:20456410-20456411
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20442000-20491000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr2:20442800-20474800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr2:20443000-20456800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr2:20444200-20457200 Strong transcription A549 lung
5 chr2:20444400-20489000 Weak transcription Stomach Mucosa stomach
6 chr2:20445400-20457000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr2:20445400-20463600 Strong transcription Fetal Thymus thymus
8 chr2:20445400-20473800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr2:20445600-20456600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:20445800-20456600 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr2:20445800-20463600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr2:20445800-20465400 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr2:20446000-20463400 Strong transcription iPS-18 Cell Line embryonic stem cell
14 chr2:20446000-20464600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr2:20446000-20464600 Strong transcription HUES48 Cell Line embryonic stem cell
16 chr2:20446200-20456600 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr2:20446200-20459400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr2:20446200-20463400 Strong transcription Liver Liver
19 chr2:20446200-20464600 Strong transcription Placenta Placenta
20 chr2:20446400-20463400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr2:20446400-20463400 Strong transcription Primary neutrophils fromperipheralblood blood
22 chr2:20446400-20463800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr2:20446400-20473600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:20446600-20457400 Strong transcription Primary T helper naive cells fromperipheralblood blood
25 chr2:20446600-20460400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr2:20446600-20463600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr2:20446800-20456600 Strong transcription Primary T cells fromperipheralblood blood
28 chr2:20446800-20463600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr2:20446800-20463600 Strong transcription Duodenum Mucosa Duodenum
30 chr2:20446800-20465400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr2:20447000-20456600 Strong transcription Rectal Mucosa Donor 29 rectum
32 chr2:20447000-20456600 Strong transcription GM12878-XiMat blood
33 chr2:20447000-20462400 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr2:20447000-20463400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr2:20447000-20463600 Strong transcription NH-A brain
36 chr2:20447000-20463600 Strong transcription Osteobl bone
37 chr2:20447000-20464000 Strong transcription Primary monocytes fromperipheralblood blood
38 chr2:20447000-20464600 Strong transcription HUES64 Cell Line embryonic stem cell
39 chr2:20447000-20465800 Strong transcription Monocytes-CD14+_RO01746 blood
40 chr2:20447000-20468600 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr2:20447000-20470200 Strong transcription Dnd41 blood
42 chr2:20447200-20456600 Strong transcription Primary T helper cells PMA-I stimulated --
43 chr2:20447200-20463200 Strong transcription HSMM muscle
44 chr2:20448000-20463800 Strong transcription iPS-20b Cell Line embryonic stem cell
45 chr2:20448600-20456600 Strong transcription H1 Cell Line embryonic stem cell
46 chr2:20448600-20456600 Strong transcription Primary hematopoietic stem cells blood
47 chr2:20448600-20456600 Strong transcription Rectal Mucosa Donor 31 rectum
48 chr2:20448800-20458000 Strong transcription HepG2 liver
49 chr2:20448800-20465200 Strong transcription Primary B cells from peripheral blood blood
50 chr2:20449600-20456800 Strong transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015