The 2.0 version of rSNPBase

Variant report

Variant rs62124597
Chromosome Location chr2:20537043-20537044
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20522800-20537400 Weak transcription NHLF lung
2 chr2:20523000-20547600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr2:20524400-20546400 Weak transcription NH-A brain
4 chr2:20526000-20544800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr2:20526600-20539400 Weak transcription HSMM muscle
6 chr2:20526800-20538200 Weak transcription HUVEC blood vessel
7 chr2:20527800-20544800 Weak transcription Placenta Placenta
8 chr2:20527800-20548200 Weak transcription Placenta Amnion Placenta Amnion
9 chr2:20527800-20549200 Weak transcription Aorta Aorta
10 chr2:20528200-20546600 Weak transcription Hela-S3 cervix
11 chr2:20528600-20546400 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr2:20530800-20540000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:20530800-20546200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr2:20531000-20539000 Weak transcription Fetal Brain Female brain
15 chr2:20531000-20544600 Weak transcription Fetal Brain Male brain
16 chr2:20531000-20549200 Weak transcription H9 Cell Line embryonic stem cell
17 chr2:20531200-20539000 Weak transcription Brain Germinal Matrix brain
18 chr2:20531200-20546400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr2:20531400-20539400 Weak transcription Fetal Intestine Large intestine
20 chr2:20531400-20546400 Weak transcription Fetal Kidney kidney
21 chr2:20531400-20547800 Weak transcription Fetal Muscle Trunk muscle
22 chr2:20531800-20547400 Weak transcription Fetal Muscle Leg muscle
23 chr2:20532000-20537200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr2:20532000-20539000 Weak transcription Fetal Intestine Small intestine
25 chr2:20532000-20542200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr2:20532000-20547400 Weak transcription Primary monocytes fromperipheralblood blood
27 chr2:20532400-20542400 Enhancers Primary T killer memory cells from peripheral blood blood
28 chr2:20532400-20545400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr2:20533000-20538400 Enhancers Primary B cells from peripheral blood blood
30 chr2:20533000-20541800 Enhancers Primary T killer naive cells fromperipheralblood blood
31 chr2:20533400-20543800 Weak transcription Primary hematopoietic stem cells blood
32 chr2:20533600-20537600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr2:20533600-20537800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr2:20533600-20538000 Enhancers Fetal Adrenal Gland Adrenal Gland
35 chr2:20533600-20539600 Enhancers Primary T helper cells PMA-I stimulated --
36 chr2:20533800-20539400 Enhancers Primary B cells from cord blood blood
37 chr2:20533800-20540000 Weak transcription Dnd41 blood
38 chr2:20533800-20540200 Enhancers Primary T regulatory cells fromperipheralblood blood
39 chr2:20533800-20540200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr2:20533800-20545200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr2:20533800-20549400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr2:20534200-20539400 Enhancers Liver Liver
43 chr2:20534200-20542000 Enhancers Primary T helper cells fromperipheralblood blood
44 chr2:20534400-20538400 Enhancers Rectal Smooth Muscle rectum
45 chr2:20534400-20542000 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr2:20534600-20537200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
47 chr2:20534600-20539200 Enhancers A549 lung
48 chr2:20534600-20539200 Enhancers HepG2 liver
49 chr2:20534600-20540200 Enhancers Fetal Heart heart
50 chr2:20534600-20540200 Weak transcription K562 blood

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Last update: Aug 31, 2015