The 2.0 version of rSNPBase

Variant report

Variant rs10173098
Chromosome Location chr2:20522686-20522687
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20460200-20528600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:20466000-20530400 Strong transcription Fetal Thymus thymus
3 chr2:20467200-20526200 Strong transcription Primary monocytes fromperipheralblood blood
4 chr2:20471800-20533800 Strong transcription Dnd41 blood
5 chr2:20474600-20528600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr2:20476600-20524800 Strong transcription Primary hematopoietic stem cells short term culture blood
7 chr2:20476600-20526600 Strong transcription Rectal Mucosa Donor 29 rectum
8 chr2:20489800-20525800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr2:20492400-20525800 Strong transcription Liver Liver
10 chr2:20499200-20527600 Weak transcription Small Intestine intestine
11 chr2:20501600-20525000 Strong transcription Placenta Placenta
12 chr2:20503000-20534600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr2:20505200-20526000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr2:20505200-20526600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr2:20505600-20523400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr2:20507800-20527600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr2:20513800-20533000 Weak transcription Right Ventricle heart
18 chr2:20514800-20524800 Strong transcription GM12878-XiMat blood
19 chr2:20514800-20525000 Strong transcription Primary hematopoietic stem cells blood
20 chr2:20515200-20525600 Weak transcription Brain Angular Gyrus brain
21 chr2:20515200-20526800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr2:20515200-20527600 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr2:20516200-20525200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr2:20516200-20525400 Strong transcription Rectal Mucosa Donor 31 rectum
25 chr2:20516400-20523400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr2:20516800-20529600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr2:20516800-20536000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr2:20517200-20525000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr2:20517600-20525000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr2:20517800-20527000 Strong transcription Primary B cells from peripheral blood blood
31 chr2:20517800-20527200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr2:20517800-20527600 Weak transcription Pancreas Pancrea
33 chr2:20517800-20530000 Weak transcription Brain Cingulate Gyrus brain
34 chr2:20517800-20530000 Weak transcription Brain Substantia Nigra brain
35 chr2:20517800-20533000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:20518000-20525600 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr2:20518000-20529200 Weak transcription Brain Hippocampus Middle brain
38 chr2:20518000-20534400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr2:20518200-20526000 Weak transcription Aorta Aorta
40 chr2:20518200-20527400 Weak transcription Esophagus oesophagus
41 chr2:20518200-20530200 Weak transcription Spleen Spleen
42 chr2:20518400-20524800 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr2:20518400-20527200 Weak transcription Placenta Amnion Placenta Amnion
44 chr2:20518400-20527400 Weak transcription HSMMtube muscle
45 chr2:20518400-20530400 Weak transcription Psoas Muscle Psoas
46 chr2:20518600-20530200 Weak transcription Stomach Smooth Muscle stomach
47 chr2:20519200-20525800 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr2:20519200-20525800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
49 chr2:20519200-20530200 Weak transcription Brain Inferior Temporal Lobe brain
50 chr2:20519600-20524400 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015