Variant report

Variant	rs73218135
Chromosome Location	chr2:20574742-20574743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20569349..20572195-chr2:20573816..20575777,2	MCF-7	breast:
2	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
3	chr2:20568048..20570618-chr2:20572813..20574858,3	MCF-7	breast:
4	chr2:20573304..20576530-chr2:20577907..20583085,5	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10153828	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10165087	0.89[AMR][1000 genomes]
rs10167509	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10168575	1.00[ASN][1000 genomes]
rs10170538	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10171025	1.00[ASN][1000 genomes]
rs10171861	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10172088	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10173098	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10174768	1.00[ASN][1000 genomes]
rs10176257	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177428	1.00[ASN][1000 genomes]
rs10178561	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10179429	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182156	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182228	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182834	1.00[ASN][1000 genomes]
rs10184976	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189781	1.00[ASN][1000 genomes]
rs10193751	0.89[AMR][1000 genomes]
rs10194789	1.00[ASN][1000 genomes]
rs10195153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195817	1.00[ASN][1000 genomes]
rs10197941	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10198897	1.00[ASN][1000 genomes]
rs10204489	1.00[ASN][1000 genomes]
rs10207798	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208668	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391140	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13398963	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13409830	1.00[ASN][1000 genomes]
rs13412971	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13421653	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425933	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426989	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13429586	1.00[ASN][1000 genomes]
rs28732678	1.00[ASN][1000 genomes]
rs55904622	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56337814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57065686	1.00[ASN][1000 genomes]
rs57459161	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58774661	1.00[ASN][1000 genomes]
rs59901600	1.00[ASN][1000 genomes]
rs60984167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62111434	1.00[ASN][1000 genomes]
rs62111435	1.00[ASN][1000 genomes]
rs62111436	1.00[ASN][1000 genomes]
rs62111437	1.00[ASN][1000 genomes]
rs62111439	1.00[ASN][1000 genomes]
rs62123438	1.00[ASN][1000 genomes]
rs62123439	1.00[ASN][1000 genomes]
rs62123441	1.00[ASN][1000 genomes]
rs62123443	1.00[ASN][1000 genomes]
rs62123444	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123446	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123448	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123450	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123451	0.89[AMR][1000 genomes]
rs62123453	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123454	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123455	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62123456	1.00[ASN][1000 genomes]
rs62123458	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124592	1.00[ASN][1000 genomes]
rs62124596	1.00[ASN][1000 genomes]
rs62124597	1.00[ASN][1000 genomes]
rs62124598	1.00[ASN][1000 genomes]
rs62124599	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124600	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124601	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124602	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62124604	1.00[ASN][1000 genomes]
rs6715475	1.00[ASN][1000 genomes]
rs6744963	1.00[ASN][1000 genomes]
rs73214391	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73214393	1.00[ASN][1000 genomes]
rs73216207	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216223	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216230	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73216236	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73218112	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73218122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565347	1.00[ASN][1000 genomes]
rs7589484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9653390	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808229	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20565800-20575200	Weak transcription	NH-A	brain
3	chr2:20570200-20574800	Weak transcription	Placenta	Placenta
4	chr2:20570200-20578600	Weak transcription	Ovary	ovary
5	chr2:20571600-20575000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
7	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
8	chr2:20574400-20575000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:20574400-20575200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:20574600-20575000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:20574600-20575200	Flanking Bivalent TSS/Enh	HepG2	liver

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