Variant report

Variant	rs8106644
Chromosome Location	chr19:23966333-23966334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 377 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:323)

rs_ID	r²[population]
rs10404600	0.81[AFR][1000 genomes]
rs10404926	1.00[YRI][hapmap]
rs10405811	1.00[YRI][hapmap]
rs10407490	0.81[AFR][1000 genomes]
rs10408772	0.81[AFR][1000 genomes]
rs10409779	0.81[AFR][1000 genomes]
rs10412149	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10413691	0.81[AFR][1000 genomes]
rs10413693	0.81[AFR][1000 genomes]
rs10415721	0.81[AFR][1000 genomes]
rs10415914	0.81[AFR][1000 genomes]
rs10417383	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10417573	0.81[AFR][1000 genomes]
rs10419170	0.81[AFR][1000 genomes]
rs10420629	0.81[AFR][1000 genomes]
rs10420774	1.00[YRI][hapmap]
rs10421962	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10422432	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10422966	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs10424970	0.81[AFR][1000 genomes]
rs10425502	0.81[AFR][1000 genomes]
rs10425931	0.81[AFR][1000 genomes]
rs10425988	1.00[YRI][hapmap]
rs10469339	0.81[AFR][1000 genomes]
rs10469386	0.81[AFR][1000 genomes]
rs10469387	0.81[AFR][1000 genomes]
rs10469388	0.81[AFR][1000 genomes]
rs10469389	0.81[AFR][1000 genomes]
rs10745017	0.81[AFR][1000 genomes]
rs10745018	0.81[AFR][1000 genomes]
rs10745019	0.81[AFR][1000 genomes]
rs10775600	0.81[AFR][1000 genomes]
rs10775601	0.81[AFR][1000 genomes]
rs10854079	0.81[AFR][1000 genomes]
rs10854080	0.81[AFR][1000 genomes]
rs10854082	0.81[AFR][1000 genomes]
rs11085621	1.00[YRI][hapmap]
rs11085624	0.81[AFR][1000 genomes]
rs11085625	0.81[AFR][1000 genomes]
rs11085626	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085627	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085628	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085629	0.81[AFR][1000 genomes]
rs11085630	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085631	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085632	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085638	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11085639	0.81[AFR][1000 genomes]
rs11085640	0.81[AFR][1000 genomes]
rs11085645	0.85[AFR][1000 genomes]
rs11666368	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11667251	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11671979	0.81[AFR][1000 genomes]
rs11880309	0.81[AFR][1000 genomes]
rs11881307	0.81[AFR][1000 genomes]
rs11882039	0.81[AFR][1000 genomes]
rs11882081	0.81[AFR][1000 genomes]
rs12459225	0.81[AFR][1000 genomes]
rs12459257	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs12460335	0.81[AFR][1000 genomes]
rs12460817	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12461000	0.81[AFR][1000 genomes]
rs12461953	0.81[AFR][1000 genomes]
rs12462374	0.81[AFR][1000 genomes]
rs12462385	0.81[AFR][1000 genomes]
rs12608740	0.81[AFR][1000 genomes]
rs12608792	0.81[AFR][1000 genomes]
rs12710235	0.81[AFR][1000 genomes]
rs12710236	0.81[AFR][1000 genomes]
rs12975351	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12976042	0.81[AFR][1000 genomes]
rs12976141	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs12976353	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12977325	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12977694	0.81[AFR][1000 genomes]
rs12979066	0.81[AFR][1000 genomes]
rs12981197	0.81[AFR][1000 genomes]
rs12981446	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12982287	0.81[AFR][1000 genomes]
rs12983759	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs1818985	1.00[YRI][hapmap]
rs1818987	1.00[YRI][hapmap]
rs1818988	1.00[YRI][hapmap]
rs1818989	1.00[YRI][hapmap]
rs1852433	1.00[YRI][hapmap]
rs2049578	1.00[YRI][hapmap]
rs62118786	0.81[AFR][1000 genomes]
rs62118787	0.81[AFR][1000 genomes]
rs62121264	0.81[AFR][1000 genomes]
rs6417219	0.81[AFR][1000 genomes]
rs6417220	0.81[AFR][1000 genomes]
rs6417222	0.81[AFR][1000 genomes]
rs6417223	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6417225	0.81[AFR][1000 genomes]
rs6417229	0.81[AFR][1000 genomes]
rs6417230	0.81[AFR][1000 genomes]
rs6417231	0.81[AFR][1000 genomes]
rs6417232	0.81[AFR][1000 genomes]
rs6417233	0.81[AFR][1000 genomes]
rs6417239	0.81[AFR][1000 genomes]
rs6417240	0.81[AFR][1000 genomes]
rs6511517	1.00[YRI][hapmap]
rs6511526	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511527	0.81[AFR][1000 genomes]
rs6511529	0.81[AFR][1000 genomes]
rs6511530	0.81[AFR][1000 genomes]
rs6511534	0.81[AFR][1000 genomes]
rs6511535	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511536	0.81[AFR][1000 genomes]
rs6511538	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511539	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511540	1.00[YRI][hapmap]
rs6511542	0.81[AFR][1000 genomes]
rs6511545	0.81[AFR][1000 genomes]
rs6511546	0.81[AFR][1000 genomes]
rs6511547	0.81[AFR][1000 genomes]
rs6511548	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511549	0.81[AFR][1000 genomes]
rs6511550	0.81[AFR][1000 genomes]
rs6511552	1.00[YRI][hapmap]
rs6511553	0.81[AFR][1000 genomes]
rs6511554	0.81[AFR][1000 genomes]
rs6511556	1.00[YRI][hapmap]
rs6511557	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511559	0.81[AFR][1000 genomes]
rs6511564	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511565	0.81[AFR][1000 genomes]
rs6511566	0.81[AFR][1000 genomes]
rs6511567	0.80[YRI][hapmap]
rs6511568	1.00[YRI][hapmap]
rs6511569	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511571	0.81[AFR][1000 genomes]
rs6511574	0.81[AFR][1000 genomes]
rs6511575	0.81[AFR][1000 genomes]
rs6511576	0.81[AFR][1000 genomes]
rs6511577	0.81[AFR][1000 genomes]
rs6511579	0.81[AFR][1000 genomes]
rs6511580	0.81[AFR][1000 genomes]
rs6511581	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511582	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511583	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511584	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511590	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511591	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511592	0.81[AFR][1000 genomes]
rs6511593	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511594	0.81[AFR][1000 genomes]
rs6511595	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511596	0.81[AFR][1000 genomes]
rs6511598	1.00[YRI][hapmap]
rs6511599	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6511600	0.81[AFR][1000 genomes]
rs6511603	0.81[AFR][1000 genomes]
rs6511604	0.81[AFR][1000 genomes]
rs6511605	0.81[AFR][1000 genomes]
rs6511607	0.81[AFR][1000 genomes]
rs6511613	0.81[AFR][1000 genomes]
rs6511614	0.81[AFR][1000 genomes]
rs6511615	0.81[AFR][1000 genomes]
rs6511617	0.81[AFR][1000 genomes]
rs6511627	0.81[AFR][1000 genomes]
rs6511628	0.81[AFR][1000 genomes]
rs6511629	0.81[AFR][1000 genomes]
rs6511639	0.81[AFR][1000 genomes]
rs6511642	0.81[AFR][1000 genomes]
rs6511643	0.81[AFR][1000 genomes]
rs6511644	0.81[AFR][1000 genomes]
rs6511647	0.81[AFR][1000 genomes]
rs6511649	0.81[AFR][1000 genomes]
rs6511651	0.81[AFR][1000 genomes]
rs6511652	0.81[AFR][1000 genomes]
rs6511653	0.81[AFR][1000 genomes]
rs6511654	0.81[AFR][1000 genomes]
rs6511655	0.81[AFR][1000 genomes]
rs6511657	0.81[AFR][1000 genomes]
rs6511658	0.81[AFR][1000 genomes]
rs6511659	0.81[AFR][1000 genomes]
rs7245505	1.00[YRI][hapmap]
rs7247110	0.81[AFR][1000 genomes]
rs7247956	0.81[AFR][1000 genomes]
rs7247963	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7248058	0.81[AFR][1000 genomes]
rs7248403	0.81[AFR][1000 genomes]
rs7248674	1.00[YRI][hapmap]
rs7248707	0.81[AFR][1000 genomes]
rs7248810	0.81[AFR][1000 genomes]
rs7249192	0.81[AFR][1000 genomes]
rs7249401	0.81[AFR][1000 genomes]
rs7249699	1.00[YRI][hapmap]
rs7249934	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs7250297	1.00[YRI][hapmap]
rs7251371	0.81[AFR][1000 genomes]
rs7251531	0.81[AFR][1000 genomes]
rs7251719	1.00[YRI][hapmap]
rs7252090	0.81[AFR][1000 genomes]
rs7252119	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7252353	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7252464	1.00[YRI][hapmap]
rs7252710	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7252827	1.00[YRI][hapmap]
rs7252844	1.00[YRI][hapmap]
rs7252853	0.81[AFR][1000 genomes]
rs7252879	0.81[AFR][1000 genomes]
rs7253131	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7253247	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7253496	0.81[AFR][1000 genomes]
rs7254453	1.00[YRI][hapmap]
rs7256585	0.81[AFR][1000 genomes]
rs7257110	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7257377	1.00[YRI][hapmap]
rs7257389	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7257983	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7258061	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7258538	0.81[AFR][1000 genomes]
rs7259105	0.81[AFR][1000 genomes]
rs7259400	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7259465	1.00[YRI][hapmap]
rs7259607	0.81[AFR][1000 genomes]
rs7260024	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7260490	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408144	0.81[AFR][1000 genomes]
rs7408187	0.81[AFR][1000 genomes]
rs7408196	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408251	0.81[AFR][1000 genomes]
rs7408258	0.81[AFR][1000 genomes]
rs7408277	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408345	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408491	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408555	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408580	0.81[AFR][1000 genomes]
rs7408592	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408667	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7408692	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409033	0.81[AFR][1000 genomes]
rs7409034	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409036	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409174	0.81[AFR][1000 genomes]
rs7409212	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409221	0.81[AFR][1000 genomes]
rs7409223	0.81[AFR][1000 genomes]
rs7409228	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409230	1.00[YRI][hapmap]
rs7409247	0.81[AFR][1000 genomes]
rs7409254	0.81[AFR][1000 genomes]
rs7409292	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7409462	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507161	0.81[AFR][1000 genomes]
rs7507258	0.81[AFR][1000 genomes]
rs7507262	0.81[AFR][1000 genomes]
rs7507266	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507272	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507284	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507316	0.81[AFR][1000 genomes]
rs7507330	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507337	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507402	0.81[AFR][1000 genomes]
rs7507749	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507810	0.81[AFR][1000 genomes]
rs7507836	1.00[YRI][hapmap]
rs7507842	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507855	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7507981	0.81[AFR][1000 genomes]
rs7508023	0.81[AFR][1000 genomes]
rs7508046	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508049	0.81[AFR][1000 genomes]
rs7508066	0.81[AFR][1000 genomes]
rs7508118	0.81[AFR][1000 genomes]
rs7508131	0.81[AFR][1000 genomes]
rs7508181	0.81[AFR][1000 genomes]
rs7508184	0.81[AFR][1000 genomes]
rs7508185	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508223	0.81[AFR][1000 genomes]
rs7508311	0.81[AFR][1000 genomes]
rs7508323	0.81[AFR][1000 genomes]
rs7508382	1.00[YRI][hapmap]
rs7508391	1.00[YRI][hapmap]
rs7508410	0.81[AFR][1000 genomes]
rs7508482	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508508	1.00[YRI][hapmap]
rs7508534	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508592	0.81[AFR][1000 genomes]
rs7508596	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508695	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs7508696	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8100590	0.81[AFR][1000 genomes]
rs8100639	0.81[AFR][1000 genomes]
rs8101386	0.81[AFR][1000 genomes]
rs8101505	0.81[AFR][1000 genomes]
rs8101514	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8101730	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8102418	0.81[AFR][1000 genomes]
rs8102569	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8102825	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8102834	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8103442	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8104129	0.81[AFR][1000 genomes]
rs8104198	0.81[AFR][1000 genomes]
rs8104208	1.00[YRI][hapmap]
rs8104542	1.00[YRI][hapmap]
rs8104688	0.81[AFR][1000 genomes]
rs8104838	0.81[AFR][1000 genomes]
rs8105049	0.81[AFR][1000 genomes]
rs8105126	0.81[AFR][1000 genomes]
rs8105288	0.81[AFR][1000 genomes]
rs8106376	0.81[AFR][1000 genomes]
rs8106426	0.81[AFR][1000 genomes]
rs8106606	0.81[AFR][1000 genomes]
rs8106810	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8107271	0.81[AFR][1000 genomes]
rs8107598	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8107626	0.81[AFR][1000 genomes]
rs8107901	0.81[AFR][1000 genomes]
rs8108524	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8108529	0.81[AFR][1000 genomes]
rs8110261	0.81[AFR][1000 genomes]
rs8110438	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8110554	0.81[AFR][1000 genomes]
rs8111690	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8111893	0.81[AFR][1000 genomes]
rs8112012	0.81[AFR][1000 genomes]
rs8112666	0.81[AFR][1000 genomes]
rs9305009	1.00[YRI][hapmap]
rs9789266	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057958	chr19:23596756-24159379	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv543963	chr19:23596756-24159379	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv931052	chr19:23610462-24133074	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv1063705	chr19:23611683-24144829	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv579047	chr19:23620632-24069443	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1058624	chr19:23620762-24071522	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv543964	chr19:23620762-24071522	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1059279	chr19:23620873-24071154	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv949038	chr19:23621540-24059150	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv1061876	chr19:23621540-24071154	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv529080	chr19:23624528-24311535	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv1057985	chr19:23624727-24133075	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
13	nsv543965	chr19:23624727-24133075	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv817490	chr19:23624728-24061026	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	nsv530395	chr19:23624728-24133074	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
16	nsv497922	chr19:23624807-24043127	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv1063538	chr19:23671507-24561180	Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
18	nsv579048	chr19:23671926-24060980	Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv579049	chr19:23671926-24061144	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv1056409	chr19:23677992-23971667	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv579050	chr19:23708666-24071154	Weak transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
22	nsv911466	chr19:23713466-23983297	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
23	nsv1065058	chr19:23724151-24503722	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
24	nsv993561	chr19:23731992-24378493	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv524183	chr19:23742358-24490299	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
26	nsv1061720	chr19:23793205-24029686	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
27	nsv1064936	chr19:23793205-24060185	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
28	nsv533257	chr19:23812263-24366074	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
29	nsv1063173	chr19:23821984-24521623	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
30	nsv1063965	chr19:23827708-24029686	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
31	nsv1056903	chr19:23827708-24503722	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
32	nsv1066151	chr19:23830504-24561180	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
33	nsv916400	chr19:23848713-24378493	Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
34	nsv498117	chr19:23868453-24376393	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
35	esv3319120	chr19:23871416-23968511	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	esv3319121	chr19:23871571-23968359	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv1062664	chr19:23885518-24047360	Active TSS ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv870182	chr19:23890942-23973883	Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
39	nsv1057543	chr19:23894439-24047360	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
40	nsv911472	chr19:23896204-24601680	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
41	nsv1063564	chr19:23898001-24029686	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
42	nsv911473	chr19:23901285-24545366	Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
43	nsv1058505	chr19:23903764-24031324	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	nsv1061681	chr19:23912494-24507160	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
45	nsv1058987	chr19:23913386-24503722	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
46	nsv543968	chr19:23913386-24503722	Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
47	nsv1061954	chr19:23928142-24358439	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
48	nsv543969	chr19:23928142-24358439	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
49	nsv1059501	chr19:23941830-23967432	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
50	nsv911474	chr19:23943243-24082673	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23946800-23973000	Weak transcription	Brain Hippocampus Middle	brain
2	chr19:23947200-23978200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:23947400-23973000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:23947400-23973800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:23948000-23969000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr19:23948000-23972400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:23948000-23976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr19:23948200-23975600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr19:23949600-23972600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr19:23949800-23975000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:23951400-23968000	Weak transcription	Fetal Thymus	thymus
12	chr19:23951400-23973800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:23952000-23974200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:23953800-23971600	Strong transcription	K562	blood
15	chr19:23955200-23969800	Weak transcription	Right Ventricle	heart
16	chr19:23956400-23968000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
17	chr19:23956600-23968400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr19:23956600-23971600	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr19:23956800-23973800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr19:23958200-23969600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr19:23958600-23968000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr19:23958600-23973800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:23959600-23975000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr19:23959800-23971600	Weak transcription	Brain Anterior Caudate	brain
25	chr19:23960200-23966600	Weak transcription	Fetal Heart	heart
26	chr19:23960400-23968000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:23960600-23973200	Weak transcription	Spleen	Spleen
28	chr19:23960800-23975800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr19:23961000-23973400	Weak transcription	Aorta	Aorta
30	chr19:23962200-23972800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
31	chr19:23962800-23969800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:23963000-23972800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr19:23963000-23973200	Weak transcription	Colonic Mucosa	Colon
34	chr19:23963400-23978200	Weak transcription	Fetal Lung	lung
35	chr19:23963600-23970800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr19:23963800-23974800	Weak transcription	Primary B cells from cord blood	blood
37	chr19:23964000-23966600	Weak transcription	Ovary	ovary
38	chr19:23964000-23971000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr19:23964200-23967200	Strong transcription	Fetal Stomach	stomach
40	chr19:23964200-23968600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr19:23964200-23970600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:23964400-23966400	Strong transcription	Gastric	stomach
43	chr19:23964400-23971600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr19:23964600-23970000	Strong transcription	Primary T cells from cord blood	blood
45	chr19:23964800-23968000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr19:23964800-23968600	ZNF genes & repeats	Lung	lung
47	chr19:23965000-23973400	Weak transcription	Esophagus	oesophagus
48	chr19:23965200-23968600	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr19:23965400-23966600	Weak transcription	Left Ventricle	heart
50	chr19:23965400-23968600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links