The 2.0 version of rSNPBase

Variant report

Variant rs6511538
Chromosome Location chr19:23957073-23957074
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23946600-23960200 Weak transcription Spleen Spleen
2 chr19:23946600-23964600 Weak transcription Left Ventricle heart
3 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
4 chr19:23946800-23957400 Weak transcription Adipose Nuclei Adipose
5 chr19:23946800-23959000 Weak transcription Fetal Muscle Trunk muscle
6 chr19:23946800-23959400 Weak transcription Brain Anterior Caudate brain
7 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
8 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
11 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
12 chr19:23947000-23957400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr19:23947200-23959800 Weak transcription Fetal Heart heart
15 chr19:23947200-23960000 Weak transcription Fetal Lung lung
16 chr19:23947200-23960400 Weak transcription Fetal Kidney kidney
17 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr19:23947400-23959400 Weak transcription Colonic Mucosa Colon
19 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
21 chr19:23947600-23964800 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr19:23947800-23959800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr19:23948000-23969000 Weak transcription Primary T helper cells fromperipheralblood blood
24 chr19:23948000-23972400 Strong transcription HUES64 Cell Line embryonic stem cell
25 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr19:23948400-23961400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr19:23948600-23959200 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr19:23949600-23972600 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr19:23949800-23975000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr19:23950200-23958800 Weak transcription Fetal Stomach stomach
32 chr19:23950200-23959200 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr19:23950400-23960200 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr19:23950800-23960400 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr19:23951200-23960400 Weak transcription Primary B cells from cord blood blood
36 chr19:23951400-23968000 Weak transcription Fetal Thymus thymus
37 chr19:23951400-23973800 Strong transcription HUES48 Cell Line embryonic stem cell
38 chr19:23951800-23959000 Weak transcription Thymus Thymus
39 chr19:23951800-23966200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
40 chr19:23952000-23974200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr19:23952400-23961400 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr19:23952800-23963800 Strong transcription Primary T cells from cord blood blood
43 chr19:23953600-23961400 Weak transcription Fetal Brain Male brain
44 chr19:23953800-23959000 Weak transcription Pancreas Pancrea
45 chr19:23953800-23971600 Strong transcription K562 blood
46 chr19:23955000-23958800 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr19:23955200-23969800 Weak transcription Right Ventricle heart
48 chr19:23955600-23957800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr19:23955600-23961000 Weak transcription NHEK skin
50 chr19:23955800-23958600 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015