The 2.0 version of rSNPBase

Variant report

Variant rs6511478
Chromosome Location chr19:23850512-23850513
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23832600-23865800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:23835200-23856600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
3 chr19:23835200-23857200 ZNF genes & repeats Fetal Brain Female brain
4 chr19:23839200-23855200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:23841400-23869200 Weak transcription Gastric stomach
6 chr19:23845000-23864000 Weak transcription Brain Substantia Nigra brain
7 chr19:23845200-23855600 Weak transcription Psoas Muscle Psoas
8 chr19:23845400-23851000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr19:23845400-23868200 Weak transcription HSMM muscle
10 chr19:23845600-23851000 Weak transcription Colon Smooth Muscle Colon
11 chr19:23845600-23851600 Weak transcription Brain Inferior Temporal Lobe brain
12 chr19:23845600-23852400 Weak transcription HepG2 liver
13 chr19:23845600-23856000 Weak transcription Stomach Mucosa stomach
14 chr19:23845600-23867600 Weak transcription Brain Cingulate Gyrus brain
15 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
16 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
17 chr19:23845800-23863800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr19:23845800-23864000 Weak transcription Brain Hippocampus Middle brain
19 chr19:23845800-23869000 Weak transcription Placenta Placenta
20 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
21 chr19:23846200-23851000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr19:23846400-23850800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr19:23846400-23851200 Weak transcription Ovary ovary
24 chr19:23846400-23853800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
25 chr19:23846400-23863800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr19:23846600-23851400 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr19:23846600-23854600 Weak transcription Placenta Amnion Placenta Amnion
28 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
29 chr19:23847000-23851000 Weak transcription NH-A brain
30 chr19:23847400-23851000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr19:23847400-23853400 Weak transcription Left Ventricle heart
32 chr19:23847800-23851000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr19:23847800-23853800 Weak transcription Stomach Smooth Muscle stomach
34 chr19:23847800-23855400 Weak transcription Adipose Nuclei Adipose
35 chr19:23847800-23863800 Weak transcription K562 blood
36 chr19:23848600-23851000 Weak transcription H1 Cell Line embryonic stem cell
37 chr19:23848600-23851200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr19:23848600-23853400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr19:23848600-23869000 Weak transcription Aorta Aorta
40 chr19:23849000-23851000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr19:23849400-23850800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr19:23849400-23851200 Weak transcription Colonic Mucosa Colon
43 chr19:23849400-23851800 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr19:23849400-23861400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr19:23849600-23851000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:23849600-23851800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr19:23849600-23854200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr19:23849600-23864000 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
50 chr19:23849800-23850800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015