The 2.0 version of rSNPBase

Variant report

Variant rs55643707
Chromosome Location chr19:23867859-23867860
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23841400-23869200 Weak transcription Gastric stomach
2 chr19:23845400-23868200 Weak transcription HSMM muscle
3 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
4 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
5 chr19:23845800-23869000 Weak transcription Placenta Placenta
6 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
7 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
8 chr19:23848600-23869000 Weak transcription Aorta Aorta
9 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
10 chr19:23849800-23868200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr19:23849800-23868200 Weak transcription HSMMtube muscle
12 chr19:23849800-23868400 Weak transcription HMEC breast
13 chr19:23852000-23869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr19:23852200-23869200 Weak transcription Esophagus oesophagus
15 chr19:23852400-23868000 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr19:23853200-23868200 Weak transcription H1 Cell Line embryonic stem cell
17 chr19:23853600-23869400 Weak transcription Spleen Spleen
18 chr19:23856600-23868200 Weak transcription Fetal Lung lung
19 chr19:23861400-23868600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr19:23861800-23868600 Weak transcription NH-A brain
21 chr19:23862400-23868600 Weak transcription Adipose Nuclei Adipose
22 chr19:23862800-23868400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr19:23863000-23868000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
24 chr19:23863000-23868400 ZNF genes & repeats Brain Germinal Matrix brain
25 chr19:23863800-23868200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
26 chr19:23864000-23868400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr19:23864000-23868600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr19:23864200-23868000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr19:23864200-23868600 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr19:23864400-23868000 Strong transcription Cortex derived primary cultured neurospheres brain
31 chr19:23864400-23868000 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr19:23864400-23868200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr19:23864400-23868600 Weak transcription Fetal Thymus thymus
34 chr19:23864400-23868600 Weak transcription Placenta Amnion Placenta Amnion
35 chr19:23864400-23869200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr19:23864400-23869200 Weak transcription Colonic Mucosa Colon
37 chr19:23864400-23869200 Weak transcription Lung lung
38 chr19:23864600-23868000 Weak transcription NHEK skin
39 chr19:23864600-23868600 Weak transcription Brain Hippocampus Middle brain
40 chr19:23864600-23868800 Weak transcription Liver Liver
41 chr19:23864600-23868800 Weak transcription Brain Substantia Nigra brain
42 chr19:23864600-23869000 Weak transcription Fetal Muscle Trunk muscle
43 chr19:23864600-23869200 Weak transcription Pancreas Pancrea
44 chr19:23864800-23868400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr19:23864800-23868600 Weak transcription Osteobl bone
46 chr19:23865200-23868400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr19:23865400-23868400 Weak transcription Duodenum Mucosa Duodenum
48 chr19:23865400-23868400 ZNF genes & repeats GM12878-XiMat blood
49 chr19:23865400-23868800 ZNF genes & repeats A549 lung
50 chr19:23865600-23868000 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015