The 2.0 version of rSNPBase

Variant report

Variant rs12608740
Chromosome Location chr19:23982380-23982381
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23965600-24000400 Weak transcription Pancreas Pancrea
2 chr19:23968600-23982400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr19:23972400-23990000 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr19:23972600-23989800 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr19:23972800-23998800 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr19:23973800-23990200 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr19:23973800-23993400 Weak transcription Aorta Aorta
8 chr19:23973800-24000400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr19:23973800-24001200 Weak transcription H9 Cell Line embryonic stem cell
10 chr19:23974200-23984000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr19:23974200-23987400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr19:23977000-23998000 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr19:23978800-23984800 Weak transcription Fetal Lung lung
14 chr19:23980000-24000600 Weak transcription K562 blood
15 chr19:23980200-23983800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr19:23980200-23994800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr19:23980400-23982800 Enhancers Fetal Heart heart
18 chr19:23980400-23985600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr19:23981400-23982400 Enhancers Primary T helper cells fromperipheralblood blood
20 chr19:23981800-23982400 Enhancers Primary T helper naive cells from peripheral blood blood
21 chr19:23982000-23982400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
22 chr19:23982000-23982400 Flanking Active TSS Pancreatic Islets Pancreatic Islet
23 chr19:23982000-23982600 Active TSS Primary T cells from cord blood blood
24 chr19:23982000-23982600 Active TSS Primary T helper naive cells fromperipheralblood blood
25 chr19:23982000-23982600 Active TSS Primary T killer memory cells from peripheral blood blood
26 chr19:23982000-23982600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr19:23982000-23982600 Active TSS Primary mononuclear cells fromperipheralblood Blood
28 chr19:23982000-23982800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
29 chr19:23982000-23982800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
30 chr19:23982000-23982800 Active TSS Thymus Thymus
31 chr19:23982000-23982800 Flanking Active TSS Dnd41 blood
32 chr19:23982000-23983400 Enhancers Primary hematopoietic stem cells blood
33 chr19:23982000-23983400 Active TSS Primary T regulatory cells fromperipheralblood blood
34 chr19:23982000-23983800 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr19:23982000-23985400 Enhancers Primary B cells from peripheral blood blood
36 chr19:23982000-23985600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr19:23982000-23997000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr19:23982200-23982400 Active TSS Fetal Thymus thymus
39 chr19:23982200-23982600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
40 chr19:23982200-23982600 Active TSS Primary T killer naive cells fromperipheralblood blood
41 chr19:23982200-23982600 Enhancers Left Ventricle heart
42 chr19:23982200-23982600 Enhancers Right Atrium heart
43 chr19:23982200-23982800 Genic enhancers HUES6 Cell Line embryonic stem cell
44 chr19:23982200-23982800 Flanking Active TSS Primary B cells from cord blood blood
45 chr19:23982200-23982800 Active TSS Primary T cells fromperipheralblood blood
46 chr19:23982200-23982800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
47 chr19:23982200-23983400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr19:23982200-24004400 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015