The 2.0 version of rSNPBase

Variant report

Variant rs12971407
Chromosome Location chr19:23864230-23864231
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23832600-23865800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:23841400-23869200 Weak transcription Gastric stomach
3 chr19:23845400-23868200 Weak transcription HSMM muscle
4 chr19:23845600-23867600 Weak transcription Brain Cingulate Gyrus brain
5 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
6 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
7 chr19:23845800-23869000 Weak transcription Placenta Placenta
8 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
9 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
10 chr19:23848600-23869000 Weak transcription Aorta Aorta
11 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
12 chr19:23849800-23868200 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr19:23849800-23868200 Weak transcription HSMMtube muscle
14 chr19:23849800-23868400 Weak transcription HMEC breast
15 chr19:23852000-23869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr19:23852200-23867800 Weak transcription Ovary ovary
17 chr19:23852200-23869200 Weak transcription Esophagus oesophagus
18 chr19:23852400-23868000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr19:23853000-23865200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr19:23853200-23865200 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr19:23853200-23868200 Weak transcription H1 Cell Line embryonic stem cell
22 chr19:23853400-23867200 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr19:23853600-23869400 Weak transcription Spleen Spleen
24 chr19:23856600-23867400 Weak transcription Primary B cells from peripheral blood blood
25 chr19:23856600-23868200 Weak transcription Fetal Lung lung
26 chr19:23858200-23867600 Weak transcription HepG2 liver
27 chr19:23859600-23864400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
28 chr19:23861200-23866800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr19:23861400-23868600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr19:23861800-23868600 Weak transcription NH-A brain
31 chr19:23862000-23867800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr19:23862400-23868600 Weak transcription Adipose Nuclei Adipose
33 chr19:23862600-23864800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr19:23862800-23864400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
35 chr19:23862800-23864600 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
36 chr19:23862800-23868400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr19:23863000-23864400 ZNF genes & repeats Primary B cells from cord blood blood
38 chr19:23863000-23867600 ZNF genes & repeats Fetal Brain Female brain
39 chr19:23863000-23867800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
40 chr19:23863000-23868000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
41 chr19:23863000-23868400 ZNF genes & repeats Brain Germinal Matrix brain
42 chr19:23863200-23865800 Strong transcription Fetal Muscle Leg muscle
43 chr19:23863200-23866200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr19:23863400-23867800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr19:23863600-23864400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
46 chr19:23863600-23867000 Weak transcription Fetal Stomach stomach
47 chr19:23863800-23864400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr19:23863800-23864400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr19:23863800-23864400 Genic enhancers Primary T cells fromperipheralblood blood
50 chr19:23863800-23864400 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015