The 2.0 version of rSNPBase

Variant report

Variant rs7257377
Chromosome Location chr19:23960245-23960246
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23946600-23964600 Weak transcription Left Ventricle heart
2 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
3 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
4 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
7 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
8 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr19:23947200-23960400 Weak transcription Fetal Kidney kidney
10 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
13 chr19:23947600-23964800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr19:23948000-23969000 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr19:23948000-23972400 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr19:23948400-23961400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr19:23949600-23972600 Strong transcription iPS-20b Cell Line embryonic stem cell
20 chr19:23949800-23975000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr19:23950800-23960400 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr19:23951200-23960400 Weak transcription Primary B cells from cord blood blood
23 chr19:23951400-23968000 Weak transcription Fetal Thymus thymus
24 chr19:23951400-23973800 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr19:23951800-23966200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
26 chr19:23952000-23974200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr19:23952400-23961400 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr19:23952800-23963800 Strong transcription Primary T cells from cord blood blood
29 chr19:23953600-23961400 Weak transcription Fetal Brain Male brain
30 chr19:23953800-23971600 Strong transcription K562 blood
31 chr19:23955200-23969800 Weak transcription Right Ventricle heart
32 chr19:23955600-23961000 Weak transcription NHEK skin
33 chr19:23955800-23962200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr19:23955800-23962600 Weak transcription Fetal Intestine Small intestine
35 chr19:23956400-23960400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr19:23956400-23968000 Strong transcription iPS-15b Cell Line embryonic stem cell
37 chr19:23956600-23968400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr19:23956600-23971600 Strong transcription H9 Cell Line embryonic stem cell
39 chr19:23956800-23965400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr19:23956800-23973800 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr19:23957400-23961600 Strong transcription Gastric stomach
42 chr19:23957800-23963400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr19:23958000-23960800 Weak transcription Stomach Smooth Muscle stomach
44 chr19:23958200-23969600 Strong transcription Fetal Adrenal Gland Adrenal Gland
45 chr19:23958400-23964600 Strong transcription Dnd41 blood
46 chr19:23958600-23961600 Strong transcription Ovary ovary
47 chr19:23958600-23968000 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr19:23958600-23973800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr19:23958800-23960600 ZNF genes & repeats Duodenum Mucosa Duodenum
50 chr19:23958800-23961600 Strong transcription Fetal Stomach stomach

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Last update: Aug 31, 2015