The 2.0 version of rSNPBase

Variant report

Variant rs11085625
Chromosome Location chr19:23973300-23973301
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
3 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr19:23949800-23975000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr19:23951400-23973800 Strong transcription HUES48 Cell Line embryonic stem cell
7 chr19:23952000-23974200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr19:23956800-23973800 Strong transcription Rectal Mucosa Donor 29 rectum
9 chr19:23958600-23973800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr19:23959600-23975000 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr19:23960800-23975800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr19:23961000-23973400 Weak transcription Aorta Aorta
13 chr19:23963400-23978200 Weak transcription Fetal Lung lung
14 chr19:23963800-23974800 Weak transcription Primary B cells from cord blood blood
15 chr19:23965000-23973400 Weak transcription Esophagus oesophagus
16 chr19:23965400-23976400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr19:23965600-24000400 Weak transcription Pancreas Pancrea
18 chr19:23965800-23976200 Weak transcription Fetal Kidney kidney
19 chr19:23967400-23974600 Weak transcription Adipose Nuclei Adipose
20 chr19:23967600-23973600 Weak transcription Ovary ovary
21 chr19:23967600-23981000 Weak transcription Dnd41 blood
22 chr19:23968600-23982400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr19:23970000-23973400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr19:23970000-23973600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr19:23970000-23981000 Weak transcription Primary T cells from cord blood blood
26 chr19:23970600-23973800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr19:23971200-23974000 Strong transcription Fetal Adrenal Gland Adrenal Gland
28 chr19:23971400-23976200 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr19:23971600-23973400 Weak transcription Placenta Placenta
30 chr19:23971600-23973600 Weak transcription K562 blood
31 chr19:23971600-23974800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr19:23971600-23981200 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr19:23972400-23990000 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr19:23972600-23973800 ZNF genes & repeats Fetal Stomach stomach
35 chr19:23972600-23989800 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr19:23972800-23998800 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr19:23973000-23973600 Strong transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr19:23973200-23973400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr19:23973200-23973600 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr19:23973200-23973600 ZNF genes & repeats Gastric stomach
41 chr19:23973200-23973600 Enhancers Spleen Spleen
42 chr19:23973200-23973800 Strong transcription H9 Cell Line embryonic stem cell
43 chr19:23973200-23973800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr19:23973200-23973800 ZNF genes & repeats Colonic Mucosa Colon
45 chr19:23973200-23973800 ZNF genes & repeats Lung lung
46 chr19:23973200-23973800 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
47 chr19:23973200-23974200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
48 chr19:23973200-23974200 ZNF genes & repeats Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015