The 2.0 version of rSNPBase

Variant report

Variant rs7246480
Chromosome Location chr19:23851746-23851747
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23832600-23865800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:23835200-23856600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
3 chr19:23835200-23857200 ZNF genes & repeats Fetal Brain Female brain
4 chr19:23839200-23855200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:23841400-23869200 Weak transcription Gastric stomach
6 chr19:23845000-23864000 Weak transcription Brain Substantia Nigra brain
7 chr19:23845200-23855600 Weak transcription Psoas Muscle Psoas
8 chr19:23845400-23868200 Weak transcription HSMM muscle
9 chr19:23845600-23852400 Weak transcription HepG2 liver
10 chr19:23845600-23856000 Weak transcription Stomach Mucosa stomach
11 chr19:23845600-23867600 Weak transcription Brain Cingulate Gyrus brain
12 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
13 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
14 chr19:23845800-23863800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr19:23845800-23864000 Weak transcription Brain Hippocampus Middle brain
16 chr19:23845800-23869000 Weak transcription Placenta Placenta
17 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
18 chr19:23846400-23853800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
19 chr19:23846400-23863800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:23846600-23854600 Weak transcription Placenta Amnion Placenta Amnion
21 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
22 chr19:23847400-23853400 Weak transcription Left Ventricle heart
23 chr19:23847800-23853800 Weak transcription Stomach Smooth Muscle stomach
24 chr19:23847800-23855400 Weak transcription Adipose Nuclei Adipose
25 chr19:23847800-23863800 Weak transcription K562 blood
26 chr19:23848600-23853400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr19:23848600-23869000 Weak transcription Aorta Aorta
28 chr19:23849400-23851800 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr19:23849400-23861400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr19:23849600-23851800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr19:23849600-23854200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr19:23849600-23864000 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
34 chr19:23849800-23851800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr19:23849800-23851800 Weak transcription Primary B cells from peripheral blood blood
36 chr19:23849800-23851800 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr19:23849800-23851800 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr19:23849800-23851800 Weak transcription A549 lung
39 chr19:23849800-23852000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr19:23849800-23852400 Weak transcription Primary T cells from cord blood blood
41 chr19:23849800-23853000 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr19:23849800-23855800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr19:23849800-23863800 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr19:23849800-23868200 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr19:23849800-23868200 Weak transcription HSMMtube muscle
46 chr19:23849800-23868400 Weak transcription HMEC breast
47 chr19:23850000-23851800 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr19:23850000-23851800 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr19:23850000-23851800 Weak transcription Fetal Muscle Trunk muscle
50 chr19:23850000-23863800 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015