The 2.0 version of rSNPBase

Variant report

Variant rs3862492
Chromosome Location chr19:23869160-23869161
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23841400-23869200 Weak transcription Gastric stomach
2 chr19:23852000-23869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr19:23852200-23869200 Weak transcription Esophagus oesophagus
4 chr19:23853600-23869400 Weak transcription Spleen Spleen
5 chr19:23864400-23869200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr19:23864400-23869200 Weak transcription Colonic Mucosa Colon
7 chr19:23864400-23869200 Weak transcription Lung lung
8 chr19:23864600-23869200 Weak transcription Pancreas Pancrea
9 chr19:23865600-23869200 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr19:23867600-23869200 Enhancers Primary T helper naive cells from peripheral blood blood
11 chr19:23868000-23870200 Active TSS Rectal Mucosa Donor 29 rectum
12 chr19:23868200-23869200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr19:23868200-23869200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
14 chr19:23868200-23869200 Enhancers Colon Smooth Muscle Colon
15 chr19:23868200-23870000 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr19:23868200-23870200 Active TSS H1 Cell Line embryonic stem cell
17 chr19:23868200-23870200 Active TSS HUES6 Cell Line embryonic stem cell
18 chr19:23868200-23870200 Active TSS iPS-20b Cell Line embryonic stem cell
19 chr19:23868400-23869200 Flanking Active TSS Primary hematopoietic stem cells blood
20 chr19:23868400-23869600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr19:23868400-23870000 Active TSS ES-I3 Cell Line embryonic stem cell
22 chr19:23868400-23870000 Active TSS GM12878-XiMat blood
23 chr19:23868400-23870200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr19:23868400-23870200 Active TSS HUES48 Cell Line embryonic stem cell
25 chr19:23868400-23870200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr19:23868400-23870200 Active TSS Primary hematopoietic stem cells short term culture blood
27 chr19:23868400-23870200 Active TSS Rectal Smooth Muscle rectum
28 chr19:23868400-23870200 Active TSS HMEC breast
29 chr19:23868400-23870200 Active TSS HSMMtube muscle
30 chr19:23868400-23870200 Active TSS K562 blood
31 chr19:23868400-23870200 Active TSS Monocytes-CD14+_RO01746 blood
32 chr19:23868400-23870400 Active TSS Fetal Brain Female brain
33 chr19:23868600-23869200 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr19:23868600-23869200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr19:23868600-23869200 Flanking Active TSS Adipose Nuclei Adipose
36 chr19:23868600-23869200 Enhancers Placenta Amnion Placenta Amnion
37 chr19:23868600-23869400 Active TSS Primary mononuclear cells fromperipheralblood Blood
38 chr19:23868600-23870000 Active TSS ES-WA7 Cell Line embryonic stem cell
39 chr19:23868600-23870000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr19:23868600-23870000 Active TSS iPS-15b Cell Line embryonic stem cell
41 chr19:23868600-23870000 Active TSS NHLF lung
42 chr19:23868600-23870200 Active TSS H9 Cell Line embryonic stem cell
43 chr19:23868600-23870200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr19:23868600-23870200 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
45 chr19:23868600-23870200 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
46 chr19:23868600-23870200 Active TSS Cortex derived primary cultured neurospheres brain
47 chr19:23868600-23870200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
48 chr19:23868600-23870200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr19:23868600-23870200 Active TSS Brain Anterior Caudate brain
50 chr19:23868600-23870200 Active TSS Brain Hippocampus Middle brain

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Last update: Aug 31, 2015