The 2.0 version of rSNPBase

Variant report

Variant rs11085622
Chromosome Location chr19:23934847-23934848
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23923000-23940600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr19:23924200-23939600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr19:23924600-23941000 Weak transcription Pancreas Pancrea
4 chr19:23927200-23940800 Weak transcription Brain Angular Gyrus brain
5 chr19:23927600-23940800 Weak transcription Brain Anterior Caudate brain
6 chr19:23927800-23940800 Weak transcription Fetal Heart heart
7 chr19:23928200-23940400 Weak transcription Osteobl bone
8 chr19:23929600-23940800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr19:23929600-23940800 Weak transcription Stomach Smooth Muscle stomach
10 chr19:23929600-23941000 Weak transcription Colon Smooth Muscle Colon
11 chr19:23929600-23941000 Weak transcription Right Ventricle heart
12 chr19:23929800-23937400 Weak transcription Fetal Brain Male brain
13 chr19:23929800-23940400 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr19:23929800-23940600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr19:23929800-23940600 Weak transcription Fetal Kidney kidney
16 chr19:23929800-23940800 Weak transcription Brain Cingulate Gyrus brain
17 chr19:23930000-23935000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr19:23930000-23940600 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr19:23930000-23940600 Weak transcription Placenta Amnion Placenta Amnion
20 chr19:23930000-23940800 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr19:23930000-23941000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr19:23930000-23941000 Weak transcription Gastric stomach
23 chr19:23930000-23941000 Weak transcription Left Ventricle heart
24 chr19:23930200-23939200 Weak transcription K562 blood
25 chr19:23930400-23940800 Weak transcription Fetal Thymus thymus
26 chr19:23930800-23937800 ZNF genes & repeats Primary hematopoietic stem cells blood
27 chr19:23931000-23937800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr19:23931400-23935000 Weak transcription Adipose Nuclei Adipose
29 chr19:23931400-23940400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr19:23931600-23940800 Weak transcription Placenta Placenta
31 chr19:23931600-23941000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr19:23932000-23935800 Strong transcription Fetal Lung lung
33 chr19:23932200-23935200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr19:23932200-23936200 ZNF genes & repeats Brain Germinal Matrix brain
35 chr19:23932200-23940800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr19:23932400-23940800 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr19:23932600-23935000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr19:23932600-23935000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr19:23932600-23940400 Weak transcription Primary B cells from peripheral blood blood
40 chr19:23932600-23940400 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr19:23932600-23940400 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr19:23932600-23940400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr19:23932800-23935200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr19:23932800-23936400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr19:23932800-23937600 ZNF genes & repeats Fetal Stomach stomach
46 chr19:23933000-23935000 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr19:23933000-23937000 Weak transcription Ovary ovary
48 chr19:23933200-23935800 ZNF genes & repeats Fetal Brain Female brain
49 chr19:23933200-23940600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr19:23933400-23936400 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015