The 2.0 version of rSNPBase

Variant report

Variant rs6511487
Chromosome Location chr19:23855753-23855754
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23832600-23865800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:23835200-23856600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
3 chr19:23835200-23857200 ZNF genes & repeats Fetal Brain Female brain
4 chr19:23841400-23869200 Weak transcription Gastric stomach
5 chr19:23845000-23864000 Weak transcription Brain Substantia Nigra brain
6 chr19:23845400-23868200 Weak transcription HSMM muscle
7 chr19:23845600-23856000 Weak transcription Stomach Mucosa stomach
8 chr19:23845600-23867600 Weak transcription Brain Cingulate Gyrus brain
9 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
10 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
11 chr19:23845800-23863800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr19:23845800-23864000 Weak transcription Brain Hippocampus Middle brain
13 chr19:23845800-23869000 Weak transcription Placenta Placenta
14 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
15 chr19:23846400-23863800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
17 chr19:23847800-23863800 Weak transcription K562 blood
18 chr19:23848600-23869000 Weak transcription Aorta Aorta
19 chr19:23849400-23861400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr19:23849600-23864000 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
22 chr19:23849800-23855800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr19:23849800-23863800 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr19:23849800-23868200 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr19:23849800-23868200 Weak transcription HSMMtube muscle
26 chr19:23849800-23868400 Weak transcription HMEC breast
27 chr19:23850000-23863800 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr19:23850800-23856400 ZNF genes & repeats Primary hematopoietic stem cells blood
29 chr19:23850800-23856600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
30 chr19:23850800-23857400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr19:23850800-23858400 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
32 chr19:23850800-23861200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
33 chr19:23851000-23856200 ZNF genes & repeats Brain Germinal Matrix brain
34 chr19:23851000-23856400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
35 chr19:23851000-23856400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
36 chr19:23851000-23856400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr19:23851000-23856600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr19:23851200-23856400 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
39 chr19:23851600-23855800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
40 chr19:23851800-23856400 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
41 chr19:23851800-23856400 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
42 chr19:23851800-23857000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr19:23852000-23856000 ZNF genes & repeats GM12878-XiMat blood
44 chr19:23852000-23856600 ZNF genes & repeats Primary B cells from cord blood blood
45 chr19:23852000-23869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr19:23852200-23855800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr19:23852200-23858800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr19:23852200-23864000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr19:23852200-23867800 Weak transcription Ovary ovary
50 chr19:23852200-23869200 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015