The 2.0 version of rSNPBase

Variant report

Variant rs7259105
Chromosome Location chr19:23948167-23948168
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23945400-23948200 Active TSS H9 Cell Line embryonic stem cell
2 chr19:23945400-23948400 Active TSS ES-I3 Cell Line embryonic stem cell
3 chr19:23945400-23949200 Active TSS HUES6 Cell Line embryonic stem cell
4 chr19:23945800-23948200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr19:23946200-23949600 Weak transcription HSMMtube muscle
6 chr19:23946600-23951400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr19:23946600-23956800 Weak transcription Gastric stomach
8 chr19:23946600-23960200 Weak transcription Spleen Spleen
9 chr19:23946600-23964600 Weak transcription Left Ventricle heart
10 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
11 chr19:23946800-23949600 Weak transcription Fetal Stomach stomach
12 chr19:23946800-23949600 Weak transcription Lung lung
13 chr19:23946800-23949800 Weak transcription Fetal Intestine Small intestine
14 chr19:23946800-23951600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr19:23946800-23952600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr19:23946800-23953400 Weak transcription Pancreas Pancrea
17 chr19:23946800-23953600 Weak transcription Placenta Placenta
18 chr19:23946800-23954200 Weak transcription Fetal Intestine Large intestine
19 chr19:23946800-23955000 Weak transcription NHEK skin
20 chr19:23946800-23956800 Weak transcription Fetal Muscle Leg muscle
21 chr19:23946800-23956800 Weak transcription Ovary ovary
22 chr19:23946800-23957000 Weak transcription Esophagus oesophagus
23 chr19:23946800-23957400 Weak transcription Adipose Nuclei Adipose
24 chr19:23946800-23959000 Weak transcription Fetal Muscle Trunk muscle
25 chr19:23946800-23959400 Weak transcription Brain Anterior Caudate brain
26 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
27 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
30 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
31 chr19:23947000-23948200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr19:23947000-23948200 Enhancers Primary T helper cells PMA-I stimulated --
33 chr19:23947000-23954800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr19:23947000-23957400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr19:23947200-23949600 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr19:23947200-23951400 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr19:23947200-23956600 Weak transcription Primary hematopoietic stem cells blood
39 chr19:23947200-23959800 Weak transcription Fetal Heart heart
40 chr19:23947200-23960000 Weak transcription Fetal Lung lung
41 chr19:23947200-23960400 Weak transcription Fetal Kidney kidney
42 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr19:23947400-23948200 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr19:23947400-23948400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr19:23947400-23948600 Enhancers Dnd41 blood
46 chr19:23947400-23949600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr19:23947400-23950200 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr19:23947400-23954600 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr19:23947400-23959400 Weak transcription Colonic Mucosa Colon
50 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015