The 2.0 version of rSNPBase

Variant report

Variant rs11085623
Chromosome Location chr19:23970402-23970403
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
2 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
5 chr19:23948000-23972400 Strong transcription HUES64 Cell Line embryonic stem cell
6 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr19:23949600-23972600 Strong transcription iPS-20b Cell Line embryonic stem cell
9 chr19:23949800-23975000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr19:23951400-23973800 Strong transcription HUES48 Cell Line embryonic stem cell
11 chr19:23952000-23974200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr19:23953800-23971600 Strong transcription K562 blood
13 chr19:23956600-23971600 Strong transcription H9 Cell Line embryonic stem cell
14 chr19:23956800-23973800 Strong transcription Rectal Mucosa Donor 29 rectum
15 chr19:23958600-23973800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr19:23959600-23975000 Strong transcription HUES6 Cell Line embryonic stem cell
17 chr19:23959800-23971600 Weak transcription Brain Anterior Caudate brain
18 chr19:23960600-23973200 Weak transcription Spleen Spleen
19 chr19:23960800-23975800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr19:23961000-23973400 Weak transcription Aorta Aorta
21 chr19:23962200-23972800 Strong transcription ES-I3 Cell Line embryonic stem cell
22 chr19:23963000-23972800 Weak transcription Fetal Muscle Trunk muscle
23 chr19:23963000-23973200 Weak transcription Colonic Mucosa Colon
24 chr19:23963400-23978200 Weak transcription Fetal Lung lung
25 chr19:23963600-23970800 Weak transcription Placenta Amnion Placenta Amnion
26 chr19:23963800-23974800 Weak transcription Primary B cells from cord blood blood
27 chr19:23964000-23971000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr19:23964200-23970600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr19:23964400-23971600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr19:23965000-23973400 Weak transcription Esophagus oesophagus
31 chr19:23965400-23971800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr19:23965400-23976400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr19:23965600-23971400 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr19:23965600-23972600 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr19:23965600-24000400 Weak transcription Pancreas Pancrea
36 chr19:23965800-23976200 Weak transcription Fetal Kidney kidney
37 chr19:23966000-23970600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr19:23966200-23971400 Weak transcription ES-WA7 Cell Line embryonic stem cell
39 chr19:23967000-23972200 Weak transcription Fetal Heart heart
40 chr19:23967200-23972600 Weak transcription Fetal Stomach stomach
41 chr19:23967200-23973200 Weak transcription Gastric stomach
42 chr19:23967400-23973200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr19:23967400-23974600 Weak transcription Adipose Nuclei Adipose
44 chr19:23967600-23973000 Weak transcription Left Ventricle heart
45 chr19:23967600-23973600 Weak transcription Ovary ovary
46 chr19:23967600-23981000 Weak transcription Dnd41 blood
47 chr19:23967800-23970600 Weak transcription GM12878-XiMat blood
48 chr19:23968000-23970600 Weak transcription iPS-15b Cell Line embryonic stem cell
49 chr19:23968400-23972000 Weak transcription Fetal Intestine Large intestine
50 chr19:23968600-23982400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015