The 2.0 version of rSNPBase

Variant report

Variant rs12982287
Chromosome Location chr19:23947812-23947813
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23945400-23948000 Active TSS HUES64 Cell Line embryonic stem cell
2 chr19:23945400-23948200 Active TSS H9 Cell Line embryonic stem cell
3 chr19:23945400-23948400 Active TSS ES-I3 Cell Line embryonic stem cell
4 chr19:23945400-23949200 Active TSS HUES6 Cell Line embryonic stem cell
5 chr19:23945800-23948200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr19:23946200-23949600 Weak transcription HSMMtube muscle
7 chr19:23946600-23951400 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr19:23946600-23956800 Weak transcription Gastric stomach
9 chr19:23946600-23960200 Weak transcription Spleen Spleen
10 chr19:23946600-23964600 Weak transcription Left Ventricle heart
11 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
12 chr19:23946800-23949600 Weak transcription Fetal Stomach stomach
13 chr19:23946800-23949600 Weak transcription Lung lung
14 chr19:23946800-23949800 Weak transcription Fetal Intestine Small intestine
15 chr19:23946800-23951600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr19:23946800-23952600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr19:23946800-23953400 Weak transcription Pancreas Pancrea
18 chr19:23946800-23953600 Weak transcription Placenta Placenta
19 chr19:23946800-23954200 Weak transcription Fetal Intestine Large intestine
20 chr19:23946800-23955000 Weak transcription NHEK skin
21 chr19:23946800-23956800 Weak transcription Fetal Muscle Leg muscle
22 chr19:23946800-23956800 Weak transcription Ovary ovary
23 chr19:23946800-23957000 Weak transcription Esophagus oesophagus
24 chr19:23946800-23957400 Weak transcription Adipose Nuclei Adipose
25 chr19:23946800-23959000 Weak transcription Fetal Muscle Trunk muscle
26 chr19:23946800-23959400 Weak transcription Brain Anterior Caudate brain
27 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
28 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
31 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
32 chr19:23947000-23948000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
33 chr19:23947000-23948200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr19:23947000-23948200 Enhancers Primary T helper cells PMA-I stimulated --
35 chr19:23947000-23954800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr19:23947000-23957400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr19:23947200-23949600 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr19:23947200-23951400 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr19:23947200-23956600 Weak transcription Primary hematopoietic stem cells blood
41 chr19:23947200-23959800 Weak transcription Fetal Heart heart
42 chr19:23947200-23960000 Weak transcription Fetal Lung lung
43 chr19:23947200-23960400 Weak transcription Fetal Kidney kidney
44 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr19:23947400-23948200 Enhancers Fetal Adrenal Gland Adrenal Gland
46 chr19:23947400-23948400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr19:23947400-23948600 Enhancers Dnd41 blood
48 chr19:23947400-23949600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr19:23947400-23950200 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr19:23947400-23954600 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015